Corynebacterium variabile: CVAR_1338
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Entry
CVAR_1338 CDS
T01594
Symbol
ligD
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cva
Corynebacterium variabile
Brite
KEGG Orthology (KO) [BR:
cva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CVAR_1338 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cva03400
]
CVAR_1338 (ligD)
Enzymes [BR:
cva01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CVAR_1338 (ligD)
DNA repair and recombination proteins [BR:
cva03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CVAR_1338 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AEK36694
UniProt:
G0HCE1
LinkDB
All DBs
Position
1537450..1538778
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AA seq
442 aa
AA seq
DB search
MADTDTTNTTDTVDVAGRTVRFTHPDKVMYPATGTTKHDLLDYARAVAPWFTAHAHDRPA
TRKRWVDGAGTAADPGESFFERNLRDGTPEWVRTREFVHESRTVTYPLVNDAATLVWLMQ
LDALEIHTPQWRYGPRGGIHGPDRAVFDLDPGKDATLADCAEVAHLVKEKLDTRDLVSVP
VTTGSRGIHVYAGLAGDHRPSVVRDLVHSIADEIAQEHPDLVTSTMSREKRQGKVLIDWS
QNDGVKCTCAPYSLRGRSQPTVAAPRYWEEIDADVRQLGYRQIMERLLTDGDPMASLLGP
DDSGPAFVIQEHDATSLHQDFRLEHDGVLVSWALPKGVPETTEQDRLAVQTPDHPLEYAS
FEGRIGEGKPGAGTVTIRDAGSYVLHSWDEDKIVVTLHGRRGRRGRRGHGNRLLGGEPQK
FALIRTEMEGNPDNWLMHRMTE
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atggctgataccgacaccacgaacaccacagacaccgtcgatgtcgccggccgcaccgtc
cggttcacccacccggacaaggtgatgtacccggcgaccgggacgaccaagcacgacctg
ctggattacgcgcgggccgtcgccccgtggttcaccgcccacgcccatgaccggcctgcc
acccgcaaacgctgggtggacggggccggcacggcagcagacccgggggagtccttcttc
gaacgtaacctgcgcgacggcacgccggagtgggtgaggacgcgtgaattcgtgcatgag
tcccgcacggtcacgtacccgctggtcaatgacgccgccacactggtctggctgatgcag
ctggatgccctggagatccataccccgcagtggcgttacggaccgcgcggcgggatccac
ggaccagaccgggccgtcttcgacctggatccggggaaggacgccaccctggccgactgt
gccgaggtagcgcacctggtcaaggagaagctggatacccgtgacctggtctccgtcccg
gtgaccaccgggagccgcggtatccatgtctatgcggggctggccggtgaccaccgaccg
tccgtggtccgggacctggtccattccatcgccgatgagatcgcgcaggagcatcccgac
ctggtgacctcgacgatgtccagggagaagcgacaggggaaggtactcatcgactggagc
cagaatgacggcgtgaagtgcacctgcgcgccctattccctgcgcggccggtcgcagccg
acggtcgcggcaccgcggtactgggaggagatcgacgcggacgtccgccagctcggctac
cggcagatcatggagcggctgctcactgacggtgaccccatggcgtcgctgctcggtccg
gacgacagtggtcccgccttcgtcatccaggaacatgacgccaccagcctgcaccaggac
ttccggctggagcatgacggcgtcctcgtctcctgggcactgccgaagggcgtgccggag
acgacggagcaggaccgtctcgcggtgcagaccccggaccacccgctggagtacgcgtcc
ttcgaaggacgcatcggggaggggaaacctggtgcgggcaccgtgacaatccgggacgcc
ggcagctacgtcctgcactcgtgggacgaggacaagatcgtcgtgacgctgcacgggcgc
cgggggcgtcggggccgccggggacacggcaaccggctcctcggtggggagccgcagaag
ttcgccctgatcaggacggagatggagggtaacccggacaactggctgatgcaccggatg
acggagtga
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