Corynebacterium variabile: CVAR_2015
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Entry
CVAR_2015 CDS
T01594
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cva
Corynebacterium variabile
Pathway
cva03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CVAR_2015 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cva03400
]
CVAR_2015 (mfd)
Enzymes [BR:
cva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CVAR_2015 (mfd)
DNA repair and recombination proteins [BR:
cva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CVAR_2015 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AEK37366
UniProt:
G0HGJ9
LinkDB
All DBs
Position
complement(2291198..2294893)
Genome browser
AA seq
1231 aa
AA seq
DB search
MSTSPSPALSGVLRTLAGDPKLRGLVTHVGDSRLHIQGPEASWPFALGTLAQHAPVLVIT
ATGRQAEDLTAELTAMLGDVVAQFPAWETLPHERLSPGIGTVAERMRVLHRLAHGELKVV
VAPTRAAVQPVMAGLGDITPVRLAEGVELDFSEVQECLVELGYTHADVVGRRGEFATRGG
ILDIFPGTGEMPVRVDFWGDEISEVRVFSVGDQRTVPGVDPGEVLVHPVRELLITDAIAE
RAGVLARENAGNPELSDALDKISQHMPVQGMESLIPVLFDGTMQTLPELMPEGTHTVELT
PGAVARRAEDLIATGKEFLAAGWEVAAMGAAAPVDVAAIDRKNTASVDRAGYRSVRSLEK
TQDTLGRPWWTVSPTGLADWETEDAEEDAEPLLLDFDPAPAPHGDVDAIGRMMATVRERV
EADGRVAYAAPNATVVARMLRRFREAGIAAEAVGVDLDGITGQGRMRRSKRSTADTPGTG
TVSIYAAVAHGGVDTRDLLFITESDVTGNRVDSRATGKRKAAKKRNRVDPLALEPGDLVV
HDQHGIGRFVKMTERTIGKGDDASRREYLVLEYAPSKRGGPGDQLYVPMDQLDMLSRYVG
GEKPALSKMGGSDWKTAKKKARGAVREIAAELVQLYAARQAAPGFAFDPDNQWTRQMEEA
FPFTETEDQYNAIEAVKDDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQSGKQVAVLV
PTTLLAQQHYRTFVDRMQDFPTTIRELSRFTSGRESKETLAGMADGTVDIVVGTHRLLAT
GVQWKNLGLVIVDEEQRFGVEHKEHITSLRTHVDVLTMSATPIPRTLEMSMTGIREMSTI
LTPPEDRHPVLTYVGAQDDRHVAAAVRRELLRDGQVFYVHNRVKSIEDAAAHIRELVPEA
RVVVAHGQMSEEQLETTVQGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQL
HQLRGRVGRSRERAYAYFFYPKGEMLTETSYDRLRTIAENNDLGAGMAVAMKDLEMRGAG
NVLGAEQSGHIAGVGFDLYVRLVGEAVEAYRAMADGEVVDGSDKEKKEIRIDLPVDAHIP
VTYIASERLRLEAYRKFAEAADDDTLAGVLEELVDRYGDFPEEVERLTVVSRLRMLCRDL
DITEVIQTGTKISFSAVNLPDSGQVRLKRLFPAAVYRATPKTVLIPAPKEGSGMRAVPLR
DDDLLQWCANALTDLAGVPRRNLREGEPVTR
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgagtcccagccccgccctgtccggcgtcctccgtaccctcgccggcgatccg
aaactccgggggctggtcacccacgtcggcgattcccgcctgcacatccaggggccggaa
gcctcctggcccttcgccctcggcaccctcgcccagcacgcaccggtgctggtcatcacc
gccacgggacgccaggccgaggacctcaccgccgaactcaccgcgatgctcggcgacgtc
gtcgcgcagtttcccgcctgggagacactgccccatgagcgtctctcgccgggcatcggc
accgtcgccgagcggatgcgcgtcctgcaccgcctggcacatggtgagctgaaggtggtc
gtggccccgacccgcgccgccgtccagccggtgatggcgggtctcggtgacatcaccccg
gtccgcctggcggagggggtggagctggacttctccgaggtgcaggaatgcctcgtcgag
ctcggctacacccacgccgacgtggtgggacgccgcggtgagttcgccacccgtggcggc
atcctcgacatcttcccgggcaccggggagatgccggtgcgtgtcgatttctggggtgat
gagatcagcgaggtccgcgtcttctccgtcggtgaccagcgcactgtccccggcgtcgac
cccggagaggttctcgtccaccccgtccgggagctgctgatcaccgacgcgatcgccgag
cgcgccggcgtcctcgcccgcgagaacgccggtaaccctgagctctcggacgccctcgac
aagatcagtcagcacatgccggtgcagggcatggagtccctcatcccggtgctcttcgac
ggcacgatgcagacgctgcccgagctcatgccggaaggcacccacacggtcgaactcacc
ccgggcgcggtcgcccgtcgggccgaggatctcatcgccaccggaaaagagttcctcgcc
gccgggtgggaggtcgccgccatgggcgccgcggccccggtggatgtcgccgcgatcgac
aggaagaacacagcttccgtcgaccgggccggctaccgcagtgtccgcagcctggagaag
acgcaggacaccctgggccggccctggtggacggtctcgccgaccggcctcgccgactgg
gagaccgaggacgcggaggaggacgccgagccactgctcctcgacttcgacccggcaccc
gccccgcacggcgacgtcgacgccatcggccggatgatggccacggtccgtgaacgggtc
gaggccgacggccgggtcgcctacgccgcccccaacgccaccgtcgtcgcccggatgctc
cggcggttccgtgaagcggggatcgccgccgaggccgtcggtgtggacctcgacgggatc
accggtcaggggcggatgcgccgctcgaagcgctccaccgccgacacccccggcaccggc
acggtgagcatctacgccgccgtcgcccacggcggtgtcgacacccgcgacctcctgttc
atcaccgagtccgatgtcaccggaaaccgggtggactcccgcgccaccggtaagcgcaag
gccgcgaagaagcgcaaccgggtcgatccgctggccctggagcccggtgacctcgtcgtc
cacgaccagcacggcatcggccgcttcgtgaagatgaccgagcgcaccatcggcaagggg
gacgacgcgtcccgccgcgagtacctcgtcctggaatatgcgccgtccaagcgcggcggt
cctggcgaccagctctacgtgccgatggaccagctcgacatgctctcccgctatgtcggc
ggcgagaagcccgccctgtcgaagatgggcggctcggactggaagaccgcgaagaagaag
gcccgtggcgcggtccgggagatcgctgcggagctggtgcagctctacgccgcccggcag
gcggcaccgggcttcgccttcgacccggacaaccagtggacccggcagatggaggaggcc
ttccccttcaccgagaccgaggaccagtacaacgccatcgaggcggtcaaggacgacatg
gagaagccggtgccgatggaccgcgtcatcgtcggcgacgtcggctacggcaagaccgag
gtcgcggtgcgcgccgcgttcaaggcggtgcagtccggcaagcaggtcgcggtcctcgtt
ccgacgaccctgctggcccagcagcactaccgcaccttcgtcgaccggatgcaggacttc
ccgacgacgatccgggaactgtcccgattcacctcgggaagggagtcgaaggagactctc
gccggtatggccgacggcaccgtcgacatcgtcgtcggcacccaccgcctgctggccacc
ggtgtgcagtggaagaacctgggcctggtcatcgtcgacgaggagcagcgtttcggtgtg
gagcacaaggagcacatcacctcgctgcgcacccacgtcgacgtgctgaccatgtccgcc
accccgatcccgcgcaccctggagatgtcgatgaccggcatccgggagatgtcgacgatc
ctcaccccgccggaggaccggcaccccgtgctgacctacgtcggcgcgcaggacgaccgg
cacgtcgccgcggcggtgcgtcgtgagctgctgcgcgacggacaggtcttctacgtccac
aaccgggtcaagtccatcgaggacgccgcggcgcacatccgtgaactcgtcccggaggcg
cgcgtcgtcgtcgcccacggccagatgagtgaggagcagctggagaccacggtccagggt
ttctgggaccgggagttcgacgtgctggtgtgcaccaccatcgtcgagaccggcctggac
atcgccaacgcgaacacgctgatcgtcgagaacgcccaccacatgggtctgtcgcagctg
caccagctgcgcggccgggtgggacgctcccgcgaacgcgcctacgcctacttcttctac
cccaagggggagatgctcaccgagacctcctacgaccggctgcgcaccatcgccgagaac
aacgacctcggcgccggtatggctgtggcgatgaaggacctggagatgcgtggcgcgggc
aatgtgctcggtgcggaacagtccggtcatatcgccggggtcggcttcgacctctacgtc
cgcctcgtcggtgaggcggtggaggcctaccgggcgatggccgacggcgaggtcgtcgac
ggctcggacaaggagaagaaggagatccgcatcgacctgccggtcgacgcccacatcccg
gtcacctacatcgccagtgaacggctgcgcctggaggcctaccgcaagttcgccgaggct
gccgacgacgacaccctggccggagtcctcgaggaactcgtcgaccgctacggcgacttc
ccggaggaggtcgagcggctcaccgtcgtctcccggctgcggatgctctgccgtgacctg
gacatcaccgaggtgatccagacgggtacgaagatcagtttctccgcagtcaatctcccg
gactccggtcaggtacgtctcaagcgtctcttcccggcggcggtgtaccgggcgacaccg
aagacggtgcttattccggcacccaaagagggctccggaatgcgggccgttccgctccgc
gacgacgacctgctgcagtggtgcgcgaacgcgctgacggacctcgcaggggttccgcga
cgcaacctgcgtgagggagagcccgtcacccgctag
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