Chromobacterium vaccinii: BKX93_18830
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Entry
BKX93_18830 CDS
T04565
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cvc
Chromobacterium vaccinii
Pathway
cvc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cvc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BKX93_18830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvc03400
]
BKX93_18830
Enzymes [BR:
cvc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BKX93_18830
DNA repair and recombination proteins [BR:
cvc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BKX93_18830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
AOZ51849
UniProt:
A0A1D9LKU1
LinkDB
All DBs
Position
complement(4045614..4049006)
Genome browser
AA seq
1130 aa
AA seq
DB search
MDTLPTLPPAGQKTRCGRLPDGLDSHAIAALAKQRRPLLVLAADAQAAQRLKAELPFFAP
DLSIALFPDWETLPYDHFSPHGDLVSERLATLWQIRQRECQVVIAPVGTALGRLAPVSYL
LGRTFFLKTGQQLDVEKLRADMVSGGYQHVTQVMAPGEFSVRGSLIDLYPMGSPLPYRID
LFDAEIDSLKTFDPDTQRTLYPVPEVRLLPAREYPADESGVTAFRQRYRERIEGDPSKSR
VYKDVSQGLWPAGIEYYLPLFFDETATLFDYVGDDALVVQHHDVQAAAETFWRDAQGRYE
MARGDVDRPVLAPADIFLRPDELMARLKPYARIEFSGDGETGAALPELAVDRRADAPLHK
LQAFIAAGGKRILLAAESLGRRETMLAFLAENGIKPTPIDSWADFAGGKAALALGVAPLY
SGFALADPAIAVVTESELYQHVARSHTRRKASRAGSDAMLRDLAEVKAGDPVVHEAHGIG
RYIGLVTMDLGEGETELMQLEYADGATLYVPVSQLQLISRYAGGATDDIQLHKLGNPAWE
KAKKRAAEKARDTAAELLNLYAQRAAREGHSFELSPADYSAFAAGFGFEETPDQATAIEA
VIQDMCSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLVPTTLLAEQHFQNFSD
RFADWPVRIAELSRFRSGKETKQALQGLADGSVDIVIGTHKLVQPDIQFKNLGLVIIDEE
HRFGVRQKEQLKRLRANVDVLTLTATPIPRTLSMALEGLRDFSAITTAPSRRLAVKTFVS
PLSNGVIREAVLRELKRGGQVFFLHNEVDTIENMREKLAELIPEARIGVAHGQLRERELE
QVMRDFLQQRFNLLLCSTIIETGIDIPNANTILINRADKFGLAQLHQLRGRVGRSHHQAY
AYLLTPDGMTRDAQKRLEAIQLSGELGAGFYLAMHDLEIRGAGEVLGEGQSGEMQEVGFS
LFTEMLKQAVRDLKKGRAPDLDAPLGVTTEINLHSPALLPDAYCPDVHERLLIYKRLASC
ETEAEIDDIHEELIDRFGLPPQSVKTLIESHRLRLVAKELGVQKLDASEVAVQITFIKNP
PIDPVKIIMLIQSKKNYRLAGQDKLRVEQALPEVAQRIVKVKEVLKELGA
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
ttggatacgctcccgaccctgccgcccgccggccagaaaacccgctgcggccgcctgccg
gacggcctggacagccacgccatcgccgcgctggccaagcagcgccgcccgctgctcgtc
ctcgccgccgacgcccaggccgcccagcggctgaaagccgagctgccgttcttcgcgccc
gacctttccatcgcgctgttcccggattgggaaacgctgccctacgaccatttctcgccg
cacggcgacctagtcagcgaacgcctggccacgctgtggcagatccgccagcgcgaatgc
caggtggtgatcgccccggtcggcaccgcgctggggcggctggcgccggtgagctacctg
ctcggccggacgtttttcctgaagaccggccaacaactcgatgtggagaagctgcgcgcc
gatatggtgtccggcggctaccagcacgtcacccaggtgatggccccgggcgaattctcc
gtccgcggcagcctgatcgacctctacccgatgggctcgccgctgccgtaccggatcgac
ctgttcgacgccgagatcgacagcctgaagactttcgaccccgatacccagcgcacgctg
tacccagtgccggaggtacggctgctgccggcgcgcgaatacccggccgacgagagcggc
gtcaccgccttccgccagcgctaccgcgaaaggatcgaaggcgatccaagcaaaagccgc
gtctacaaggacgtgtcgcagggtctgtggccggcgggcatcgaatactatctgccgctg
ttcttcgacgaaaccgcgacactgttcgactacgtcggcgacgacgcgctggtggtgcag
caccacgacgtgcaggcggcggcggaaaccttctggcgcgacgcgcagggccgctacgag
atggcgcgcggcgacgtcgaccgtccggtgctggcgccggccgacatcttcctgcgcccg
gacgagctgatggcgaggctcaagccctacgcccgcatcgaattctccggcgacggcgaa
accggcgccgcgttgccggagctggcggtggaccgccgcgccgacgcgccgctgcacaag
ctgcaagccttcatcgccgccggcggcaagcgcatcctgctggcggcggaaagcctgggc
cggcgcgaaaccatgctggccttcctggccgaaaacggcatcaaaccgacgccgatagac
agctgggccgatttcgccggcggcaaggccgcgctggcgctgggcgtcgcgccgctctac
tccggcttcgcgctggccgatccggccatcgccgtggtgaccgaaagcgagctgtaccag
cacgtcgcccgcagccacacccgccgcaaagccagccgcgccggctccgacgcgatgctg
cgcgacctggccgaggtcaaggccggcgacccggtggtgcacgaggcgcacggcatcggc
cgctacatcggcctggtgacgatggacctgggcgagggcgagaccgagctgatgcagctg
gagtacgccgacggcgccacgctgtacgtgccggtgtcgcagctgcagttgatctcgcgc
tacgccggcggcgccaccgacgacatccagctgcacaagctgggcaacccggcctgggaa
aaggccaagaagcgggccgccgagaaggcgcgcgacaccgcggccgagctgctgaacctg
tacgcgcagcgcgcggcgcgcgagggccacagcttcgagctgtcccctgcagactacagc
gccttcgccgccggcttcggcttcgaggaaacgccggaccaggccaccgccatcgaggcg
gtgatccaggacatgtgctccggcaagccgatggaccggctggtctgcggcgacgtcggc
ttcggcaagaccgaggtggcgctacgcgccgccttcgttgcggtgatgggcggcaagcag
gtggcggtgctggtgcccaccaccctgttggccgagcagcatttccagaacttctccgac
cgcttcgccgactggccggtgcgcatcgccgaactgtcgcgcttccgtagcggcaaggaa
accaagcaagccttgcagggcctcgccgacggcagcgtcgacatcgtcatcggcacccac
aagctggtgcagcctgatatccagttcaagaatctgggcctggtcatcatcgacgaggag
catcgcttcggcgtgcggcaaaaggaacagctgaaacggctgcgcgccaatgtggacgtg
ctgacgctgacggcgacgccgattccgcgcacgctgtcgatggcgttggaaggcctgcgc
gacttctccgccatcaccaccgcgccgtcgcgccggctggcggtgaaaaccttcgtcagc
cccctctccaacggcgtgatccgcgaagcggtgctgcgcgagctcaagcgcggcggtcag
gtgttcttcctgcacaacgaagtcgacaccatcgaaaacatgcgcgagaagctggccgaa
ctgatcccggaggcgcgcatcggcgtcgcccacggccaattgcgcgagcgcgagctggaa
caggtgatgcgcgacttcctgcagcagcgcttcaatctgctgctgtgctccaccatcatc
gaaaccggcatcgacatccccaacgccaacaccatcctgatcaaccgcgccgacaagttc
ggcctggcgcagctgcaccagctgcgcggccgcgtcggccgcagccatcaccaggcctac
gcctacctgctgacgccggacggcatgacccgcgacgcgcagaagcggctggaggcgatc
cagttgtccggcgagctgggcgcgggcttttacctggcgatgcacgacctggagatccgc
ggcgccggcgaggtgctgggcgaaggccagtccggcgagatgcaggaagtgggcttctcg
ctattcaccgagatgctgaagcaggcggtgcgcgatctgaaaaaggggcgcgcgcccgac
ctcgacgcgcccttgggcgtcaccaccgagatcaatctgcacagcccggccttgctgccc
gacgcttactgccctgacgtgcacgagcggctgctgatctacaaacggctggccagctgc
gagaccgaagccgagatcgacgacatccacgaagagttgatcgaccgcttcggcctgccg
ccgcagagcgtgaagacgctgatcgaaagccaccgcctgcgcctggtcgccaaggagttg
ggcgtgcagaagctggacgccagcgaggtggcggtgcagatcaccttcatcaagaacccg
ccgatcgacccggtgaagatcatcatgctgatccagagcaagaagaactaccgcttggcg
gggcaggacaagctgcgggtggagcaggcgctgccggaagtggcgcagcggatcgtgaag
gtgaaagaggtgttgaaggagttgggcgcgtag
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integrated database retrieval system
