Charadrius vociferus (killdeer): 104288980
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Entry
104288980 CDS
T08577
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03013
Nucleocytoplasmic transport
cvf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104288980 (UPF1)
03015 mRNA surveillance pathway
104288980 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvf03019
]
104288980 (UPF1)
Enzymes [BR:
cvf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104288980 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104288980 (UPF1)
Messenger RNA biogenesis [BR:
cvf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104288980 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104288980 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104288980
NCBI-ProteinID:
XP_009886168
LinkDB
All DBs
Position
Unknown
AA seq
1089 aa
AA seq
DB search
MKEAGSPSGSKIYSTLLWRCCGGECTEEYPLPSFEREGKSVTELVFQVNGPDGILQNGAV
DDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRG
NTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLC
RQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELW
KENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNI
TVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGD
EIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHE
VEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHL
ARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMD
SMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQ
FRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLV
VLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFY
VTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQF
SGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYG
VIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARF
MTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVM
PPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPF
SQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQH
GGVTGLSQY
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggctgggtccccatctggaagtaagatttactccacgctgctttggaggtgt
tgtgggggtgaatgtactgaggaatatccccttccttcttttgaaagggagggcaaatca
gtcactgagcttgtatttcaggttaatggacctgatggcattctgcagaatggagctgtg
gatgataatgtggctaaaaccagccagcttctggcagagttgaattttgaagaagatgaa
gaagatacctattacacaaaggatcttcctgtgcatgcttgcagttactgtggtatccat
gaccctgcttgtgtggtttactgtaacaccagcaaaaagtggttctgtaacgggcgtgga
aatacatctggcagccacatcgttaatcatcttgtgagagcgaagtgcaaagaggtgact
ctccataaagatgggcctctaggagagactgtcttggaatgttataactgtggatgtcgt
aatgtgtttctccttggctttattccagctaaggcagactcggtggttgtcttgctgtgc
aggcagccatgtgccagtcagagcagtttaaaggatattaattgggacagttcacagtgg
cagcctcttatccaagatcgctgtttcctttcatggctggtaaagattccatctgaacag
gagcagttgagagcacgtcagattacagctcaacagattaacaaactggaagaactttgg
aaggaaaatccatctgcaacccttgaggacttagaaaagcctggtgttgatgaagaaccg
cagcatgtcctgcttagatatgaagatgcttatcaataccaaaatatatttggtcctcta
gtcaagcttgaggcagactatgacaagaaactcaaggagtctcagacccaagataacatc
acagtcagatgggacctgggcttgaacaagaaaagaattgcttatttcactttgccaaag
actgattcagatatgcgtcttatgcaaggagatgagatctgcttgaggtacaaaggagac
ctggcccctttatggaaaggaattggtcatgttatcaaagttcctgataattatggtgat
gagatagccattgagctgaggagcagcgttggagcacctgtggaagtcactcataacttc
caagtggattttgtatggaagtctacttcattcgacaggatgcagagtgctttaaaaacg
tttgctgtggatgagacttcagtgtctgggtacatctatcacaaactgttaggtcatgag
gtagaagatgtaattattaaatgccagttgccaaagcgctttacagcacaaggacttcct
gatctcaaccattctcaggtttatgctgtgaagactgtcctgcagcgtcctctgagcctt
attcagggtccccctggtaccggaaaaacagtgacatcagccacaatcgtctatcatctg
gctagacagggcaatgggcctgtgttagtctgtgctccgagtaatatagctgtagatcag
ctgactgagaagatccatcagactggactgaaagtggttcgtctgtgtgctaaaagtcgt
gaggcgattgactctcctgtatccttcttggcattgcataaccagatcaggaacatggat
agcatgccagagcttcagaaactgcagcagcttaaagatgaaactggagaactgtcatct
gctgatgagaaacgttaccgtgcactgaaacgaacagcagagcgtgaattacttatgaat
gcagatgtgatctgttgcacatgtgtgggagccggtgatccaagacttgcaaaaatgcag
ttccgctccattctgattgatgaaagcacacaggcgactgagccagagtgcatggtgcca
gtcgtcctgggagcaaaacagcttattcttgtgggtgaccactgccagctcggtcctgtt
gtgatgtgtaaaaaagctgcgaaggctggtctatctcagtccctcttcgagaggctcgtg
gtgctgggcattcgtccgattcgcctgcaggtgcagtaccgcatgcatcctgcgctcagt
gcttttccatccaatatcttctatgagggttcactccagaatggtgttactgcagcggat
cgtgtgaaaaaagggtttgatttccagtggccacagccagataagccaatgtttttctat
gttacacaaggacaggaagaaattgccagctcgggcacttcttacttgaacaggacggaa
gctgccaatgtggagaagataactacaaagctattgaaagctggtgccaaaccagatcag
attggcattattactccttatgaaggtcaaagatcctatctggtgcagtacatgcaattc
agtggttccttgcatacaaagctctaccaggaagtggaaattgcaagtgtggatgccttc
cagggacgagagaaggactttattatcctttcttgtgtgagggccaatgaacaccagggg
atagggtttctgaatgaccccaggcgtcttaacgtagctcttacaagagcaaggtatgga
gtaattattgttgggaacccaaaagcgctgtctaaacaaccactttggaatcacctgctg
aattactacaaggaacagaaggttctggtggagggaccactgaataacctccgggaaagc
cttatgcagttcagcaagccccggaaacttgtcaataccatcaacccaggtgcccgtttc
atgactactgccatgtatgatgcacgtgaggctattattccaggatctgtctatgaccgg
agcagtcaagggcgcccatccaacatgtacttccaaacccacgaccagatcgggatgatc
agtgctggccccagccacgtcacagctatgaacattcctatccctttcaaccttgtgatg
ccaccgatgccaccgccgggatattttggccaggctaacggaccagccgcaggacgtggg
gcaccaaaaggaaagactggtcgtggtgggcgccagaaaaatcgttttgggattcctgga
actagtcagtcaaaccttccaaatagtcaagcgagccaagacgtggtgtcccagcctttc
tcccagggtccactgactcaggggtatatctccatgagtcagccatcacagatgagtcag
cctgggctctcccaaccagaactatcacaggacagttaccttggtgatgagtttaaatct
cagattgacgtggcgctgtcacaggactctacttaccagggtgaacgtgcatatcaacat
ggtggagtgacgggactgtcacagtattag
DBGET
integrated database retrieval system
