Charadrius vociferus (killdeer): 104295074
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Entry
104295074 CDS
T08577
Symbol
HELZ
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
cvf
Charadrius vociferus (killdeer)
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvf03019
]
104295074 (HELZ)
Messenger RNA biogenesis [BR:
cvf03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
104295074 (HELZ)
3'-5' decay
Other 3'-5' decay factors
104295074 (HELZ)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
zf-CCCH
AAA_30
AAA_19
UvrD-helicase
ResIII
PhoH
PAM2
zf_CCCH_4
Mov-10_helical
zf-CCCH_4
AAA_22
AAA_5
AAA_7
AAA_16
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
104295074
NCBI-ProteinID:
XP_009893077
LinkDB
All DBs
Position
Unknown
AA seq
1942 aa
AA seq
DB search
MADRRPEKSCEQACESLKQQDYEVAVKHCTEALLSLSQYPPAHLPEACQAEIDRIKIETL
LYRIASFLQLKKYGQADEDCRHVLGEGLAKGDGSFRAVLCCMHLKGKLQIVSNVLSKSLM
GESLNGMVTKDLTRLKTLLAETEAAGKVPSGYHVEDLEEGSRDGWQFRPPPRGVTSSEEY
TLCKRFLEQGICRYGAQCTSAHSQEELTEWQKRYASRLIRLKQQKENKQCSGSYMETLIE
KWMNSLSPEKVLSESVEGVRVEHNPELSVTVTTKKSHQTWTFALTCKPARMLYRVALLYD
AHRPHFSIVAISAGDSTTQVSQEVPENCQEWIGGKMVQNGIDHYIYKVSIAFNTEIFGTF
RQTVVFDFGLEPVLMQRVMIDAASTEDLEYLMHARQQLLTTAKRWDATSKTIVEFEPNET
TELEKSLLTRYQIPLSADQLFTQSVLDKSLTKTNYQSRLHDLLYIEEIAQYKEVSKFNIK
VQLQIVASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVTK
EKSAQTQGTKEKVYEAAIEEKTKDYIFLRVSRECCEELNLRADCEMQVELQFQLNRLPLC
EMHYALDRIKDNSILFPDVSMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLSIQL
PPVLIIGPYGTGKTFTLAQAVKHILQQQDTRILICTHSNSAADLYIKDYLHPYVEAGNPQ
ARPLRVYFRNRWVKTVHPVVHQYCLISSTHSTFQMPQKEDILKQRVVVVTLNTSQYLCQL
DLEPGFFTHILLDEAAQAMECETIMPLALANKNTRIVLAGDHMQLSPFVYSEFARERNLH
VSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYPLT
FFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQVF
RIRAELRKKRLSDVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKRKEQLLEDSTE
DLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHENESLHGIT
FEQIKAQLEALELKKTYVLNPLAPEFIPRALRHQHSANTTKQQQSPPKGKVHHHNQNDHF
PPDGIVQPNPSVLIGNPIRAYTPPPPPLGPHPNLGKSPSPVQRIDPHTGTSILYVPAVYG
GNMVMSVPLPVPWTGYQGRFAVDPRIITHQAAMAYNMNLLQAHGRGSPIPYGLGHHSPVS
LGQQQQLQHQDKEQHEQSRNGKSENTAGPEISKIRTPEKKPLESKQVDLEANSQNRSPES
RSSVGYPNAKFHRKDNLNPRQLNLHLTPPHSQYAVPNRHFQHLSQIPRQPYPLQQQQNLL
SQQQNHLPEQQNQMPPQQSQVVQQHNHLSQQPPQPSQLSPAFQAGLSQSFFNNPIPHRPH
SPAVDAVISEQHPPPMLQEVNNPLRPIAQHNPVLPTHLNNFIEENPSGMPLGDTLDRMHG
NVALETIRQQQQARLQQWNEHNAYLSQGTIPYQHHHHPHLPHLPQQPIGLHQQQQVRANW
KLASNTEDETEATYSRFQDLLRELSHRDQSESRDLAEMPPPQSRLLQYRQVQPRSPPALP
SPSCNSNHSGHFPNFTENNRDVEIPSNPAFQQHLPQIYNPPFSMPSEHITPSPLKYLQPD
GSWTYANLQQNHLMGQGFHYGIPPLPHRSQQNPFIQIQNHQHAVGQEPFHPLASRAVSAS
SLHSLEEYEPRGPGRPLYQRRISSSSVQACSEELSTPQDSLGQCKELQDHSNQSSFNYSS
PELWVNSSSSAPYPNIPCNGANRAVPPRELLAPPPKTVKPPEEHLKAENIQLSNSFNYSV
LQHLGQFPPLMPNKQIVESNSSSQQNAGGSKPVMSYASALRAPPKPKPPPEQTKKNSDPL
SLFQELSLGSSSGSNGFYSYFK
NT seq
5829 nt
NT seq
+upstream
nt +downstream
nt
atggcagacagaagaccagagaagtcatgtgaacaagcatgtgaatctcttaagcagcag
gattatgaagtggcagtgaagcattgcacagaggctctcctttccctcagccagtacccc
ccagctcacctcccggaggcatgccaggcagaaatcgaccgcatcaaaatcgagactctt
ctgtatagaattgcttcttttttacaacttaaaaagtatgggcaagcagatgaagactgt
aggcatgtgctgggagaggggctggccaagggagatggatctttccgtgcagtgctctgc
tgcatgcatcttaaagggaagctgcaaattgtgtctaatgttctttccaaatcactgatg
ggtgaatcactgaacgggatggtaactaaagatctgacacgactgaaaacacttcttgct
gaaacagaggcagctggtaaagtaccatcaggatatcatgtagaagatttagaagaaggg
tcccgggatggctggcagttccgccctccacccaggggagtcacgagcagtgaagaatat
acgctatgtaaaagatttttagagcaagggatctgcaggtacggtgcacagtgtacttca
gcacattcccaggaagagctaacagaatggcaaaaacgatatgcttcccgcttgatcaga
ttaaaacagcagaaggaaaacaaacaatgttcgggcagttatatggaaaccttgattgag
aaatggatgaattcgttatctcctgagaaagtgcttagtgaaagtgtagaaggagtgaga
gtagaacataatcctgagctatcggtaactgtcaccaccaaaaagtctcatcagacatgg
acatttgctctcacttgtaagcctgcaagaatgctgtatcgagtggcattgctttatgat
gcccatcgtccacattttagtatcgttgcaatatctgctggagacagcactacccaggta
tcacaagaagttccagaaaactgtcaggaatggataggaggaaagatggtccagaatgga
atagatcattatatatacaaagtcagtatagcctttaacacagaaatctttggaactttt
cgccaaactgttgtgtttgattttggattagaaccagtcctcatgcaacgagtaatgatt
gatgctgcttcaactgaagatcttgaatacctgatgcatgcacggcaacagctactaacc
acagctaagcgttgggatgctacttctaagactattgtagaatttgagcctaatgaaact
actgaattggagaagagccttcttaccagataccaaatccctctatctgctgaccagcta
tttacacaatctgtgctggacaaatcattgaccaagaccaactatcagtcacggctacat
gacctcctttatattgaggaaatagcacagtataaggaagttagcaagttcaacataaaa
gtgcaattgcagattgtagcaagcttcatgctcactggtgtttctggaggtgcaaagtat
gcccaaaatggacagctttttggccgctttaagctcactgaaacgctttcggaagacact
ttggctggacggctggtgatgaccaaagtcaatgctgtttatttattgcctgtcactaaa
gagaagtcagcacagacccaaggaaccaaagagaaggtttatgaagcagctattgaggag
aaaacaaaggattatatcttcttgagggtatccagggaatgctgcgaggaacttaatctt
cgggcagattgtgaaatgcaggttgaacttcagtttcagttaaatcgcttacccctctgt
gaaatgcattatgccttggacaggattaaggacaacagtattttgtttccagatgtcagc
atgactcccaccataccctggagtcccaacagacaatgggatgagcagttggaccctcga
ctaaatgctaagcagaaagaggctgttctggctatcactactccactttcaatacaactg
cctcctgttcttatcatcggtccctatgggacaggaaaaacgttcactctggctcaggca
gtcaagcacatactccaacaacaggatactaggattctcatttgcacccattctaatagt
gctgctgatctctacataaaggattatttacatccatatgtagaagcaggcaatccccag
gcaagacctctcagggtatatttcagaaatcgctgggtaaagactgtccacccagttgtg
catcagtactgtttgatttcaagcacacattccacctttcagatgccacagaaagaagac
attcttaagcaacgagtagtagttgttactttaaatacatcacagtatctgtgtcaactg
gatcttgaaccaggtttttttacacacattctgttagatgaagctgcgcaggctatggag
tgcgaaactattatgcctctagcattagctaataaaaacacaagaattgtcttggctgga
gaccatatgcagctcagtccttttgtctacagtgaatttgccagggaaagaaaccttcat
gtttcattgcttgatcggctctatgagcactaccctgcagaatttccatgcaggatcttg
ctgtgtgagaactatcgctcccatgaagctatcatcaattatacatctgaacttttctat
gaaggcaaattgatggcaagtggaaagcagccagcacacaaagatttctaccctttgact
ttcttcacagcacgtggagaagatgtgcaagaaaaaaacagtacagctttttacaataat
gcagaggtgtttgaagtagtagagcgtgttgaagaattaagaagaaaatggcctgttgcc
tggggcaaattggatgatggcagtataggtgtcgtaacaccttacgctgatcaagtgttc
agaattcgggctgaacttcggaaaaaaagactgtctgatgtcagtgtagagagagtgcta
aatgttcagggaaaacagtttagagttttgtttctcagcacagtacgaacacggcataca
tgcaaacataagcaaacaccgattaaaaggaaagagcagttactggaggattcaacagaa
gacttggattatggttttctgtctaattacaaacttctcaacactgccattacaagagca
caatccttggtagctgtggtgggagatcctattgctttatgttccattggaagatgcagg
aaattttgggaaaggtttattgccctatgtcatgagaatgaaagtctccacggtatcaca
tttgaacagatcaaagctcagttggaagctttggagttaaagaaaacttatgtgttgaac
ccactggctcccgaatttatccctcgagctcttcggcatcaacattcagcgaataccacc
aaacaacagcagtcaccaccaaagggcaaagtccatcatcataaccagaatgaccatttc
ccgcctgatggaattgttcagcccaatccttctgttctaattggaaatcctatccgagca
tatactcctccccctcctcctctgggacctcaccccaatctggggaaatctccaagtcct
gttcaaaggatagatccgcacactgggacaagtattctatatgtacctgctgtctatgga
ggaaatatggtcatgtctgtgcctttgcctgtgccatggacggggtatcagggtaggttt
gcagttgaccctcgaatcattactcatcaagcagctatggcatataatatgaacctgtta
caggcacatgggcgtgggtctcctataccttatggcctgggtcatcattctcccgttagc
ctaggacaacagcagcagcttcagcatcaagacaaggagcaacatgaacaaagtcgaaat
ggtaaaagtgaaaacactgctggacctgaaatcagtaaaattcgaacacctgagaagaaa
cctttggaatccaagcaggttgacttagaagcaaattctcagaatagaagcccagagtca
cgttccagtgttggttatcctaatgctaaatttcatcgcaaagataatcttaaccccagg
cagctgaatctacatctcaccccaccccactcacagtatgcagttcccaaccgccacttc
cagcacctgtcacagataccgaggcagccgtatcctctgcagcagcagcaaaacctttta
agtcaacaacaaaatcatttgcctgaacaacaaaaccaaatgccaccccagcaaagccag
gtagtccagcagcataaccatttgagtcagcagcctccacaaccttcgcagctttcccct
gctttccaggcaggcctcagccagtctttttttaataatccgattccccaccgaccacat
tctcctgctgtagatgctgtgatttcagaacaacaccccccacctatgttacaagaagtc
aataatcctttgaggcctattgcacagcacaaccctgttctgccaacccacttgaacaac
ttcattgaagagaatccatcaggaatgcccttaggggacactttagatcgtatgcatgga
aatgtagctttggaaacaataaggcagcaacaacaagccaggttacagcaatggaatgaa
cataatgcctatctcagtcaaggcactattccatatcaacaccatcaccatcctcatcta
ccacatcttcctcagcaaccaattggattgcatcaacagcagcaagttagggcaaactgg
aaacttgccagtaatacagaagatgaaacagaggccacatattcaagattccaggatttg
ctcagagaactgtcacaccgtgatcaaagtgaaagtcgggacttagccgaaatgccaccc
cctcagtcaagactgttgcaatacagacaagttcagcccagaagcccaccagcactccct
tctccttcctgcaactctaaccacagcggtcactttcctaacttcactgaaaacaacaga
gacgttgaaatacccagtaacccagcatttcagcagcatttaccccaaatatacaatccc
cctttctcaatgccatctgaacatataaccccatctcccttgaaatacctgcaacctgat
ggatcgtggacttatgctaacctacagcagaatcaccttatggggcagggctttcattat
ggtatacctccattgccccataggtcgcaacaaaacccttttatacaaatacagaatcat
cagcatgcagtcggtcaggagccatttcatccactcgcatctcgagcagtatctgcttct
tcgctccacagcttagaagagtatgaaccaagaggaccaggcaggccgttgtaccaaaga
agaatttcctctagttcagtccaggcttgttctgaagaattaagcactcctcaagacagt
cttggtcagtgtaaagagcttcaggaccacagtaaccagtcatctttcaactattcatca
cctgagttgtgggtaaactcctcctcatctgccccgtacccaaacattccatgcaacggc
gccaacagagcagtcccaccccgggagttgttggctcctccaccgaagacggtcaagccc
ccagaggaacacctgaaggccgaaaacatacagctctccaattccttcaactacagcgtg
ctgcaacacctcggccagttccccccgctcatgcccaacaagcagatcgtggagtcgaac
agcagcagccagcagaacgccggcgggagcaagcctgtcatgtcctacgcaagtgctctg
cgggctccgccaaagcccaaacctcctcctgagcagacaaaaaagaatagcgaccctttg
tctttgtttcaggaacttagcctaggtagttcatcaggtagcaatggcttttactcctat
tttaaataa
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integrated database retrieval system
