Cyprinodon variegatus (sheepshead minnow): 107086800
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Entry
107086800 CDS
T06110
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
107086800 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvg03400
]
107086800 (lig4)
Enzymes [BR:
cvg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
107086800 (lig4)
DNA repair and recombination proteins [BR:
cvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
107086800 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Octopine_DH
ATG17_like
Motif
Other DBs
NCBI-GeneID:
107086800
NCBI-ProteinID:
XP_015233485
Ensembl:
ENSCVAG00000007896
UniProt:
A0A3Q2DVZ6
LinkDB
All DBs
Position
Unknown
AA seq
908 aa
AA seq
DB search
MEGTSKSDGAAEPSVAAQVPFLHLCTTLEKIQKSKLRPDKSKILGDFIKSWREFHAALHK
DDPKTTDSFYPAMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKNGPDASKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVAINNASKQKDLVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGVSKETVLQVFHPDAAELYNVNTDLKKVCQQLHDPSVSL
SDVSIELFSAFKPMLAAVANIRNVEKQMGNSPFFLETKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGGSPLEGSLTPYIHNVFKSNIVNCILDGEMMAYNPVAETFMQKGSKFDIKRLV
DDSELQTCFCVFDVLLVNNQKLGKEPLKKRYDTLQTIFTPVKGRIHVVPKTEVRTMQEVV
GALNDAIDKREEGIMVKDPLSIYKPDKRGEGWLKIKPEYMDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAVAEAPKPGEKPSVFHSFCRIGSGYTMKELYDLGLKLARHWKVYRKNDPP
ASILCGAEKPEVYIEPCNSVIIQVKAAEIVGSDMYKTNCTLRFPRIEKIREDKEWHQCMT
LAELDQFRGKASGKLASRHLRIDDDSEPQKKKRKLPVKPKKVIGVVDHFRPQDLSGVSKE
TDMFEDVEFCILNGTEDHPKSELEKGVARCGGIVVQNPGRDTYCVIAGVENMRVKNLISS
NQHDVVWASWLLECLDQKEVVPWQPRHMIHMSPSTREHFAKEYDSHGDSYFVDTDEQQLR
EVFGRINAVQAVNPAQVEERYGWEDLPTSMFRPFTIYLDVFANIGDPESAVAATGLDIRA
LEFRYHGGTVVQTLEEGVSYVVVENETRILDLRTLRRRFRKKFKIVKDSWVTDSIKAGYL
MSDADYLV
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggaaggaacttctaaaagcgatggtgccgctgagccgagtgttgctgctcaggtacct
ttcctccacctctgcacaactttagagaaaatccagaagtccaaactccgtccagataaa
tccaagatccttggggatttcattaaatcatggcgggaatttcatgctgcactccacaag
gacgacccaaaaacgacagactccttctaccctgctatgcgccttattgtgcccccgttt
gaacgagagagaatggcttacggcatcaaagagagcatgctggctaagctctatattgat
gttttaggactcccaaagaatggccccgatgccagtaagctgctgaactaccgcgctccg
accacatcccaaggagaggctggggactttgctggcatggcgtactttgtgctaaagaaa
cgatgtaccagccaaggaaacctcagtatcaaagaggtcaatgactttctagactcggtg
gccatcaataatgccagcaagcagaaggatctggtgaaaaaaagcctgctgcatcttatc
actcaaagctctgctctggagcaaaagtggctcattagaatgattctgaaggacatgaag
ctcggagttagcaaagaaaccgtgctccaggtcttccacccggacgccgcggagctctac
aacgtcaacaccgacttaaagaaagtgtgccaacagctgcacgacccctctgtgtcttta
agcgacgtctcgatagaactcttctctgctttcaagcccatgctggcggcggtggctaac
atccgcaacgtagagaagcagatgggaaacagcccctttttccttgagacaaagctcgac
ggcgagcggatccagctgcacaaggacggggacgtgtacaagtacttcagccggaacgct
ttcgagtacacgcagcagtttggaggatcgccgctcgaggggtcgctcactccttacatc
cacaacgtctttaaaagcaacatcgtcaactgcatcctggacggcgagatgatggcgtac
aacccggtggcagagaccttcatgcagaaagggagcaaatttgacattaagagactggtg
gacgactccgagctgcagacgtgcttctgtgtgtttgacgtgttgctggtcaataaccaa
aagctcggcaaagaacccctgaagaagcggtatgacacccttcagaccattttcacgcct
gtcaaggggcggatacacgtggtgccgaagacagaagtcagaaccatgcaagaggtggtt
ggtgctctcaatgacgctatcgataagagggaggaagggatcatggtgaaggaccctctt
tccatctataaacctgataaacgaggtgagggctggctaaagataaagccggaatacatg
gatggcttgatggatgagctggacttgctgattgtcggtggttactgggggaaaggaaga
cgaggagggatgatgtcccactttctatgcgctgtggccgaagcgccaaagcctggtgag
aaaccatcggtcttccactccttctgccgcattggctcaggttacactatgaaagagttg
tatgacctggggttaaagctggcgaggcactggaaagtctaccggaagaacgacccgcca
gcatccatcctctgcggagcagagaaaccagaagtctacatcgaaccctgcaactcggtc
atcatccaggtcaaagcggctgagatcgtcggcagcgacatgtacaagaccaattgcact
ctgcgcttccccagaatcgaaaagatccgcgaggacaaagagtggcaccagtgcatgacc
ctggcagagctggatcagttccgcggcaaggcatcggggaagctggcttcgcgccacctc
cgcattgacgacgacagcgaaccgcagaagaagaagaggaagctgcccgtcaaacctaag
aaggtgatcggcgtcgtcgatcactttaggccccaggacctgtctggggtttccaaggag
acggatatgtttgaggatgtggagttctgcatcctgaacggcactgaggatcacccaaag
tccgagctggagaagggcgtggccaggtgtggaggtatcgtagttcagaacccagggcgg
gacacctactgcgtgatcgctggggtggagaacatgcgcgtgaagaacctgatttcatcg
aaccagcacgacgtggtttgggcctcctggctgctggagtgcctggaccagaaggaagtg
gtgccatggcaaccccgccacatgatccacatgtctccctccacccgggaacatttcgcc
aaggagtacgacagccacggcgacagctacttcgtggacacggacgagcagcagctgcgg
gaggtgttcggcaggatcaacgcggtgcaggctgtcaatccggcgcaggtggaggagcgc
tacggctgggaggacctccccaccagcatgttcagaccgttcaccatttacttagacgtg
tttgccaacatcggagatccagaaagcgccgtagcggctaccggtctggacatcagggcg
ctggagtttcggtaccacggagggacggtggtgcagacgttggaggaaggcgtttcatac
gtggttgttgagaacgagaccagaattctggatctgaggactctgagacgccgctttagg
aagaagtttaagatcgtaaaagattcctgggtgacggactctatcaaagcaggttatctg
atgagtgatgctgattacttagtgtga
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integrated database retrieval system
