Cyprinodon variegatus (sheepshead minnow): 107087420
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Entry
107087420 CDS
T06110
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cvg04121
]
107087420
Ubiquitin system [BR:
cvg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
107087420
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
zf-C3HC4
SPRY
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_5
zf-RING_6
U-box
zf-RING_10
Prok-RING_4
MRP-S31
Gp58
DUF4239
Motif
Other DBs
NCBI-GeneID:
107087420
NCBI-ProteinID:
XP_015234476
LinkDB
All DBs
Position
Unknown
AA seq
554 aa
AA seq
DB search
MAQKVTNLEQEKISCSICLDLLKDPVTIPCGHSYCMDCIKDHWDTDGPRRNYSCPQCRKE
FRPRPVLQKNIMLAALIDDLNGIHISPADHCYAGPEDVACDVCIGRKLKAVKSCLVCLAS
YCENHLQPHYDAPPLKRHKLTHPVKKLQEIICSRHDEVMKIFCRTDQQCICYLCLMDEHK
GHETVPAAAERTEKQKELQERRQQIQQRIQDQEKDVKLLQQEVEAINGSADKAVEDNEKI
FTDLIRLILKRSSDVKQQIRSQQETEVSRVKELQKKLEQEITELKRKDAELEKLSITEDH
TQFLQNYPSLSALSESTHSSSINIRPLRYFEDVTAAVSELREKIQDILRDTWTNISELIA
EVDVLLSEPMTRAEFVKYSQEITLDPNTANRFLLLSEGNRKVEITDEPQPYADHPDRFTD
YKQVLSRESLTGRCYWEVEWRGEGGVDAVAASYGNISKEGRLDECLFGGNDKSWSLYSYT
NGYTFSYNNIHTPVSGPVSSRIGVYLDHRAGILSFYSVSETMTLLHRVQTTFTQPLYAGV
RLYDGSSVEFIKLK
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaaggttactaatctagagcaagaaaaaatctcctgctccatctgtttggat
ctgctgaaggatccggtaaccattccctgtggtcacagctactgtatggactgcattaaa
gaccactgggatacggatggtccaaggaggaactacagctgccctcagtgcaggaaagag
ttcagaccaagacctgtcctgcagaaaaacatcatgctggctgctttaatcgatgatcta
aatggaatccacatttctccagctgatcactgctatgctggacctgaagatgtggcctgt
gatgtctgcatcgggaggaagctgaaggctgtcaagtcctgtctggtttgtttggcttct
tattgtgagaatcacctccagcctcactatgatgctccaccattaaagagacacaaactg
acacaccctgtgaaaaagctccaggagatcatctgctctcgtcatgatgaggtgatgaag
atcttctgtcgtactgatcagcagtgtatctgttatctctgcttaatggatgaacataaa
ggccatgaaacagtcccagctgcagcagaaaggactgagaagcagaaggagctccaggag
agacgacaacaaatccagcagagaatccaggaccaggagaaagatgtgaagctgcttcaa
caggaggtggaggccatcaatggctctgctgataaagcagtggaggacaatgagaagatc
ttcactgatctgatccgtctcatcctgaaaagaagctctgatgtgaagcagcagatcaga
tcccagcaggaaactgaagtgagtcgagtcaaagagcttcagaagaagctggaacaggag
atcactgagctgaagagaaaagatgctgagctggagaagctctcaatcacagaggatcac
acccagtttctccagaactacccctcactgtcagcactcagtgagtctacacactcatcc
agcatcaatattcgtcctctgagatactttgaggatgtgacagcagctgtgtcagagctc
agagagaaaatacaggacatcctgagagacacatggacaaacatctcagagttgatcgct
gaagtggatgttttactgtcagaaccaatgaccagagctgagtttgtcaaatattcacaa
gaaatcaccctggatccgaacacagcaaacagatttctgttattatctgagggaaacagg
aaagtagaaataactgatgagccacagccttatgctgatcatcctgacagattcactgat
tataaacaggtcctgagcagagagagtctgactggacgctgctactgggaggtggagtgg
agaggagaagggggagttgatgctgtagcagcttcatatggaaacatcagtaaagaagga
agattagatgaatgtttgtttgggggaaacgacaaatcttggtcattatacagttacact
aacggttacacgttttcctacaacaacatccatactccagtatcaggtccagtttcctcc
agaataggagtgtatctggatcacagagcaggtattctgtctttctacagcgtctctgaa
accatgactctcctccatagagtccagaccacattcactcagcctctatatgctggggtt
aggctttatgacggatcctctgttgagtttattaaactgaaataa
DBGET
integrated database retrieval system