Cyprinodon variegatus (sheepshead minnow): 107092640
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Entry
107092640 CDS
T06110
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03030
DNA replication
cvg03410
Base excision repair
cvg03420
Nucleotide excision repair
cvg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107092640 (lig1)
03410 Base excision repair
107092640 (lig1)
03420 Nucleotide excision repair
107092640 (lig1)
03430 Mismatch repair
107092640 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cvg03032
]
107092640 (lig1)
03400 DNA repair and recombination proteins [BR:
cvg03400
]
107092640 (lig1)
Enzymes [BR:
cvg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
107092640 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
107092640 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
107092640 (lig1)
DNA replication proteins [BR:
cvg03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
107092640 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
107092640 (lig1)
DNA repair and recombination proteins [BR:
cvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
107092640 (lig1)
NER (nucleotide excision repair)
Other NER factors
107092640 (lig1)
MMR (mismatch excision repair)
Other MMR factors
107092640 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
107092640
NCBI-ProteinID:
XP_015242716
Ensembl:
ENSCVAG00000010811
UniProt:
A0A3Q2CTH3
LinkDB
All DBs
Position
Unknown
AA seq
1004 aa
AA seq
DB search
MQRSIASFFQPKSKVKDVQKKTADEPVNKPVKSPLKVQNGVQEADSPVKKVTKRSRQILD
SDEDEAPVVKEQGGKGATAKTEKVDDVFKAVPTPLSPTPAISTPVTPATPATPASSASPG
TPSTPSSISPSGIVKRKTARKMFPKRKLDESESGSGSRKGESEVAEEQGQQNKRPRVESS
VSSAGNTDEPMEEGAKEEKVEKTVAEANSLDEEVENKKKDEGEKAKKEEEQVEEKISDEK
EKKAEGAEKKNEAKEKTDDEEGPKEEVVEKDTKDTGSPKSQTEEKKQKQARERKDKEPAK
KTPISSFFAPRKAGIKTEKPEKREGEKPTNSERKSSEEERKETKGESTSGQTDYDPSRPN
YHPVEHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLSPDDLLCCVY
LCLNQLGPAYLGMELGVGETVLMKAVAQATGRHLDKIKAEAQEKGDLGLVAESSRSNQRT
MFQPASLTAGGVFKKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRI
GLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSAESRRAWIEEKSLILKQTYCEMPN
YDVIIPVLLKEGIDELPKHCKLTPGVPLRPMLAHPTKGVGEVMKKFDEAKFTCEYKYDGE
RAQIHILESGEVRIFSRNQEDNTSKYPDIISRIPKVKKDSVVSCVLDAEAVAWDQEKKQI
QPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRELLRESFTEVEGE
FLFARSIDSHDTETIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDG
VGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDEDNEEFQSVCKIGTGFKDEDLEQHYKFL
KEHILPKPRPYYRVDQSAEPDVWLDAVQVWEVKCADLSLSPIYKAAMGMVDAEKGISLRF
PRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatccttctttcagcctaagagcaaagttaaggacgtccagaag
aaaactgcagatgaaccagtaaacaagcctgtgaagagccccctgaaggtgcagaacggc
gttcaggaagcagattcgcctgtcaagaaggttaccaagcgcagccgtcaaatcctggac
agcgacgaggacgaggcgccggttgtaaaagaacaaggtggcaaaggagctactgctaaa
acagagaaggtggacgatgtgtttaaggctgttcccaccccactgtctccgacaccagct
atatctacgcctgtaaccccagcaaccccagcaactccagcctcctctgcttctccaggg
acgcccagcactcccagttcaatctccccttctggaattgtgaagcgcaaaacagcgagg
aagatgttccccaagaggaagctggatgagagcgagagcggcagcgggagtcggaaaggg
gagtctgaggttgcggaggagcagggtcagcaaaacaaacgaccccgtgtggagagcagt
gtcagcagcgcagggaacaccgatgaacccatggaggagggagcaaaggaagaaaaggtt
gaaaagacagtggctgaggctaacagcctagatgaagaggtggagaacaagaagaaagac
gaaggagagaaggccaagaaggaggaggagcaggtggaagaaaagatctcggatgagaaa
gaaaagaaagctgagggggcggaaaagaaaaatgaagcaaaggagaagaccgatgatgag
gagggccccaaagaggaggtggttgaaaaggacacgaaagacacagggagcccaaaaagt
caaacagaggaaaaaaagcagaaacaggcaagggagcggaaagataaggagccagccaag
aaaaccccaatcagcagtttctttgctcccagaaaagcaggaattaagacagagaaacca
gagaagagagaaggagagaaacctacaaattcagagaggaagagctctgaggaagaacgg
aaagaaacaaaaggtgaatccacctccggacagacggactatgatccatccagaccaaac
taccatccagtggagcacgcctgctggaagcaaggccaaaaagtgccgtacttggcagtg
gctcgaacctttgagaaaattgaagaggactctggcaggctgagaaacattgagacgctg
tcaaacctgcttcgttcggtgctgctgctctctccagacgacctgctgtgctgcgtgtac
ctgtgtttgaaccagctcggccctgcctacctggggatggagctgggcgtcggggagacg
gtgctgatgaaagccgtcgctcaagcaaccgggcgacatttggacaaaattaaagcggag
gcgcaggagaaaggagatttgggccttgtggccgagagttcccgtagcaaccagcgcacc
atgttccagccagccagtctgacagcaggaggcgtgtttaagaaattgaaggaaattgcc
agtatgagtgggaactcggccatgaataagaaaatcgacatcatcaaaggcctctttgtg
gcgtgccgcttctctgaggcccgctacatagtcaggtctctggctgggaagctgaggatt
ggccttgctgagcagagtgtcctctccgctcttagccaggctgtctgcttgaccccacct
ggacaaggtttccctcccgctgtgattgacgcagggaaagggatgagtgctgagagcagg
cgggcctggattgaagagaagagcctcattctcaaacaaacttactgcgagatgccaaat
tacgacgtcatcatccccgttttgctgaaagaaggcatcgacgagctgcccaaacactgc
aaactcaccccaggcgtgccgctgaggcccatgttggcacaccccaccaagggtgtcggc
gaggtgatgaagaagtttgacgaggcaaagttcacctgcgagtacaaatacgacggagag
cgtgcacagattcatattctggagagcggtgaggttcgaattttcagccgcaaccaggaa
gacaacaccagcaaataccccgatatcatctcgcgcatccccaaggtgaagaaggactcc
gtagtgtcctgtgtcctggacgcagaggcggtggcctgggatcaagagaagaagcagatc
caacccttccaagtcctcaccacaaggaagagaaaggacgtggacgcctcagagatcaaa
gtccaagtatgcgtgtatgcctttgacctcctctatctcaacggagagtccctggtgcga
cagccgctgtgccggcgtcgggagctgctcagagagagcttcacagaggtggagggagag
tttctgttcgcccgttccatcgactctcacgacaccgagactatcgccgagttcctggag
caatccgtccgagactcctgcgagggcctgatggtaaaaactcttgagaaggatgcaaca
tacgagattgccaagcgttctcataattggctcaagctgaagaaggattacctggacggg
gtgggcgacacggtggacctctgcgtgattggagcttaccttggaaagggaaagcgaaca
ggaacgtacggcggcttcctgctggcctgctatgatgaagacaacgaggagtttcaatca
gtctgcaagatcggaacaggctttaaggatgaagatctggagcagcattacaagttttta
aaggagcacatcctgcccaaaccacgtccctactaccgcgtggaccaatccgctgagcct
gacgtatggttagacgcagtgcaggtttgggaagtgaagtgcgccgacttgtcgctgtca
cccatctacaaggctgccatgggaatggtggatgcagagaagggcatttctctgcgcttc
cctcgtttccttcggatcagagacgacaagaagcctgaggacgccaccaccggagctcag
attgctgatttgtacaagaagcagcaacagattcagaatcaaggggagaaagctgacccg
gaggactactactga
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integrated database retrieval system
