Cyprinodon variegatus (sheepshead minnow): 107093675
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Entry
107093675 CDS
T06110
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03022
Basal transcription factors
cvg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107093675
09124 Replication and repair
03420 Nucleotide excision repair
107093675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvg03021
]
107093675
03400 DNA repair and recombination proteins [BR:
cvg03400
]
107093675
Transcription machinery [BR:
cvg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
107093675
DNA repair and recombination proteins [BR:
cvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
107093675
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
IBR
HscB_4_cys
Ham1p_like
Motif
Other DBs
NCBI-GeneID:
107093675
NCBI-ProteinID:
XP_015244362
Ensembl:
ENSCVAG00000016605
UniProt:
A0A3Q2D620
LinkDB
All DBs
Position
Unknown
AA seq
392 aa
AA seq
DB search
MDEEPERAKRWEGGYERTWEVLKEDESGSLKATVEEILYQSKRKRVTQSHAQVRLGMMRH
LYIVIDCSRSMEDQDLKPNRLTSTLKLMEGFVDEYFDQNPISQVGIITTKNKRAEKLTEL
AGNPKKHIAALKKAVDMPCVGEPSLYNSLSLAVQTLKHMPGHTSREILIVLSSLTTCDPA
NIYELIKNLKSLKVRVSVIGLSAEVRVCTVLTRETGGSYHVILDESHFKELLMLHVKPPP
ASFSSECSLIRMGFPQHTVAFLSDPDVRPSFSMSHLDGAGGPALSLGGYFCPQCRAKYTE
LPVECKVCGLTLVSAPHLARSFHHLFPLQPFIESPAEDHQDIRFCQACQAVLRDKTVFSC
PSCRSVFCVECDLFIHESLHCCPCCIHSRTAT
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggagccggagcgagcaaagcgctgggagggaggctatgaaaggacatgggag
gtcctgaaggaggatgaatccggctcccttaaagcgacggtggaggagatcctgtaccag
tccaagaggaagagggtgacccaaagccatgcgcaagtgaggctggggatgatgcgccac
ctctatatagtgatcgactgttcacgcagtatggaggaccaggacctgaagcccaaccgt
ctcacgtctacactgaagctgatggagggattcgtcgacgagtattttgaccagaacccc
atcagtcaggtcggcatcatcaccactaaaaacaaaagggctgagaagctgaccgagctg
gcagggaatccaaagaagcacatcgctgccctgaagaaagcggtggacatgccgtgtgtc
ggagagccgtctctctacaactccctcagcctggccgttcaaacgctcaagcacatgcct
ggacacaccagccgcgagatcctcatcgtcctcagcagcctgaccacctgtgacccggct
aacatctacgagctcatcaagaacctgaagtctctgaaggttcgcgtatcggtgatcggg
ctgtcggcggaggtccgggtctgcacggttctgaccagagagacgggcgggtcgtaccac
gtcatcctggatgagagccacttcaaagagctgctcatgctgcacgttaaacccccccca
gccagcttctcgtcagaatgctcgctgatacggatggggtttcctcagcacactgtggcc
tttctgagcgacccagacgtcaggccgtccttcagcatgtcccacctggacggcgccggg
ggtccggctctgtctctaggaggatacttctgcccgcagtgccgtgccaagtacacagag
ctgccagtggaatgtaaagtgtgcggtttgacgctggtgtccgccccacacctggccaga
tccttccatcacctctttccccttcaaccatttatagagagtccagccgaggaccatcaa
gacatcaggttttgtcaggcctgtcaggcagtgctgagggataaaactgtgttctcatgt
ccatcgtgtcgcagcgtgttttgtgtggagtgcgatctcttcatccacgagtcgctacac
tgctgtccctgctgcattcacagtcggaccgccacatga
DBGET
integrated database retrieval system
