Cyprinodon variegatus (sheepshead minnow): 107093811
Help
Entry
107093811 CDS
T06110
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03013
Nucleocytoplasmic transport
cvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107093811 (upf3b)
03015 mRNA surveillance pathway
107093811 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107093811 (upf3b)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107093811 (upf3b)
mRNA cycle factors
P-body specific factors
107093811 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
107093811
NCBI-ProteinID:
XP_015244584
Ensembl:
ENSCVAG00000005030
LinkDB
All DBs
Position
Unknown
AA seq
471 aa
AA seq
DB search
MKEDKENTRPKEKKVEIRCEDGEKTEKCKEKKETMTKVETASRAVIASSSCLKIVIRRLP
PNLTKEELEEQLQPLPEVDYMEFFSNDTSLFPHLFARAYISFKNQEDIVLFRDRFDGYVF
IDNRGQEYPAIVEFAPFQKTAKKRSKKKDSKCGTIIEDPDYKRFLEYYNGDEEKLTSTPE
TLLEEIEARSKELEAKKTTPLLDFLKNKQRLREEKKEERKRRELERKRIRDEERRKWREE
ERRKRKEAEKMKRLEKPLENKDKEQNKEEPKIKLLKKPDRNEDGDSEKPKEKFKKPEKPH
REDRPSGGPDHRRRQNLGSREDRERKGYEDGRKEFRERDLEREKEREHRQREKERIRRQD
EERRRRREQQDGENTCRKREEELKKEKALERRRSENSADSPHSEKLEKPARENKKEESGK
RERVRNKDRPAIQLYQPGARSRNRTTGGAESSSADRKPEPDNKKAGDRGDD
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaagacaaagaaaacacgcgaccgaaggagaaaaaagtcgagataaggtgtgaa
gatggagagaagacggagaagtgtaaggagaagaaggagaccatgacaaaggtagaaact
gctagcagagctgttattgctagcagcagctgcttaaagattgtgatcaggaggttacct
ccaaatctaactaaagaggagctggaggagcagctgcagcctcttccagaggtggactac
atggagtttttctctaacgacaccagccttttcccccatctcttcgccagagcttatatc
agtttcaaaaatcaggaggacattgttctcttcagggatcgattcgatggatatgtcttc
atagataacagaggacaggagtatcctgccatcgtggagtttgcccctttccaaaagacg
gctaagaaaagaagcaagaagaaggactcaaaatgtggaacaattattgaagatcccgat
tataaaaggttccttgagtattacaatggagatgaagagaagctgacatcgacgccggag
actctgctagaggagatcgaggcaagatcgaaggaactggaagccaaaaaaacaactcct
ctgctggactttctgaagaacaaacagaggctgagggaggaaaagaaggaggagagaaaa
aggagggagcttgagcggaagcgcatacgtgacgaagagcgccgcaagtggagggaagag
gagcggaggaaacgaaaggaggcggagaagatgaaaagacttgagaaaccgctggagaat
aaagacaaggagcagaacaaagaagaacccaaaattaagctcctgaagaagccggacaga
aatgaggatggagattctgaaaagcccaaggagaagttcaagaaacctgagaagccacat
agagaggaccgaccctcaggaggccctgatcacaggaggaggcagaacttaggcagcagg
gaggatcgagaaagaaaaggatatgaagatggccggaaggagttcagagagcgtgatttg
gagcgagagaaggagagggagcaccggcagagagagaaggagcgcatccgacggcaggac
gaggagcggcggagacggagggaacagcaggacggggagaatacgtgcagaaaacgggag
gaggagctgaaaaaagaaaaggccttagagaggaggagaagtgagaactctgcagactcc
cctcactccgagaagctggagaaacccgccagagagaacaagaaggaggagagcggtaaa
agggagcgagtgcgtaataaggaccggcccgccattcaactgtaccagccgggggccagg
agccgcaaccgcacgacaggaggagcagaatccagctctgccgaccggaaaccagagccc
gataacaagaaagcaggagacagaggagatgactga
DBGET
integrated database retrieval system
