Cyprinodon variegatus (sheepshead minnow): 107097846
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Entry
107097846 CDS
T06110
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cvg03009
]
107097846 (ighmbp2)
03012 Translation factors [BR:
cvg03012
]
107097846 (ighmbp2)
Enzymes [BR:
cvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107097846 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
107097846 (ighmbp2)
Ribosome biogenesis [BR:
cvg03009
]
Eukaryotic type
Other ribosome biogenesis factors
107097846 (ighmbp2)
Translation factors [BR:
cvg03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107097846 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_19
AAA_30
zf-AN1
DEAD
Viral_helicase1
nSTAND3
Helicase_RecD
AAA_22
AAA_16
ResIII
UvrD-helicase
IstB_IS21
Flavi_DEAD
PhoH
SLFN-g3_helicase
HEM4
AAA
T2SSE
Zot
SRP54
ATPase
AAA_25
ABC_tran
AAA_31
ATPase_2
Motif
Other DBs
NCBI-GeneID:
107097846
NCBI-ProteinID:
XP_015250646
Ensembl:
ENSCVAG00000007876
LinkDB
All DBs
Position
Unknown
AA seq
1057 aa
AA seq
DB search
MIFHREVGLESSGRARKKHGLKTLLTQTAAPNPSYCLLKYRGGEADIIGGDCPLYAKVGD
MSTAVLQKVTLVVKLVFSLTVQVIHQYNDPTSSYRACPHLLRQAVRIWQENISLKDLQNK
GVCLLKLQIGSQSTGLYGRTVVILEPRKHLGFSSLPSNSFGPGDIVGLYDTSGCSAESQI
CTGIVTRISQASISVAFDDLKDEASFDADGLYNLLKLANDVTYKRMKRALNTLNGYRNGP
AASLIPVLFGDAQPSAHSQSNELEFFNSGLDDSQREAVSFALSQRELAVIHGPPGTGKTT
TVVEIILQAVKQGQKVLCCAPSNVAVDNLVERLARSKAKVLRLGHPARLLESIQKHSLDA
VLACSDNASIIADIRKDIDKAMVGMKKKSEKGERGNFRREIGELRKELRSRETAAIAQIL
KSADVVLSTNTGACDDGPLKFLPAEHFDWVVIDECAQALESSCWIALLRARKAILAGDYK
QLPPTIKSQTAAAKGLSLSLMERLIQMYGESVVRMLTVQYRMNSAIMDWASKEMYHGRLT
AHSSVEGHLLKDLPGVTCMEETSIPLLLIDTAGCGLSELEISDEQSKGNQGEVDIVGLHI
KSLTEAGVKAKDIAVIAPYNLQVDLLRQKLSARHPELEIKSVDGFQGREKEAVVLSLVRS
NRKGEVGFLAEDRRINVAVTRARRHIAVVCDTQTVGNHAFLKSLIDHMTEFGEVRTAFEY
LQDIVPQNYTRDHKDTKTATACKSSKQKNRDQVSAKAKDGQKTTSSAKSNTAGSQNHAKQ
NTSAQKDQKESKIRYDEIRAQVENFMKDANMENLQFPSSFNSHDRLLVHQIAEELGLVHE
SRGQGSDRCITVSRPLASKPAEEPEQEETQEEETAPTLQSEQTPQPSLDLKALHLERMRR
EQQKREENLQKKKQENSTNGKKKSKGKSKTKAGVCEIAAAAAPDDDFDALISAVVKADSV
CSFVKCKASVLTLGQLCLFCNRQFCLSHHIPEVHGCGDKAKSHARMRISKEGVLYAGSGK
KDKSLDPNKKAYLQRKLDSKLKDMASQRKPKNKENDT
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgatatttcacagagaggtgggactcgagagcagcgggagagcgaggaaaaaacacgga
ctgaaaacgctcttaacacagacagctgcacccaaccccagttactgtttgttgaagtat
cgagggggggaagcggacattattggtggggactgtcccctctatgccaaagttggagac
atgtccacagcagtccttcaaaaagttacgctagtggttaaacttgtgtttagcttgacg
gttcaagtcattcatcagtacaacgatcccaccagcagttatagggcctgccctcatttg
ctacggcaagccgtgaggatatggcaggagaacatttccttaaaagatcttcagaataaa
ggagtttgcctgttaaagcttcagataggaagtcagtccacgggcctgtatggtcgcacg
gtcgtcattttagagccaagaaagcatcttggcttctcatcgctgccgagcaacagtttt
ggaccaggcgatattgttggcctatatgacacttctggctgcagtgcggaatcacagata
tgcacagggatagtaacaaggatcagccaagcttctattagtgtggccttcgatgacctg
aaggatgaagccagttttgatgcagatggcctttacaatctcttgaaactggccaacgat
gttacctataaacggatgaaacgggccttaaatacattaaatggatacagaaacggacca
gctgcaagtttgatacctgttctcttcggtgatgcccaaccttctgcgcactcacagtca
aacgagttggagttctttaattcaggattggatgattcccagagagaagcagtgtccttt
gctctttcacaaagagagctggctgtgattcatggaccgccaggcacgggaaaaaccact
acagtggtggagatcatcctgcaagccgtgaaacaaggccagaaggtcctctgctgtgct
ccctccaatgttgccgttgataatttagtggaaagacttgcccgcagcaaagccaaagtc
ctgaggctgggccatcctgccagactgctggaatccatccagaaacactcgctggatgct
gtcctcgcttgtagcgacaacgcaagcatcatcgctgacatccggaaagatatcgacaaa
gcaatggtggggatgaagaagaaaagtgaaaaaggcgagcgaggaaactttagacgggaa
ataggggagctgaggaaagagctgaggagcagggagacggcagccattgctcagatactg
aagagtgctgacgtcgttttgtccaccaacactggtgcatgtgatgacggtcctctgaag
ttcctgccagcggagcattttgattgggtggtaatcgatgaatgcgcccaggctctggag
agcagctgctggatcgcgttactcagagcacgcaaagcaatcctggctggagactacaag
cagttacccccaaccatcaaatcacaaacggctgcggccaaaggcctgtctctaagtctg
atggaaagactgattcagatgtacggagagtcagtggtccgtatgctaacagtccagtac
cgcatgaacagtgctatcatggattgggcctccaaggagatgtaccatggaagactaact
gcgcacagttccgtggagggacatttattaaaggatctaccaggtgtcacctgcatggaa
gagaccagcattccgcttcttctgatcgacactgcaggatgtggtctgagtgaactggag
atctcagacgagcagtccaaaggcaaccaaggtgaggtcgacattgttggactgcacata
aaaagcttgactgaggctggagtgaaagctaaagacatcgctgttattgctccatataat
ctacaggttgatcttctgcgtcagaaactttctgcacggcacccagaactggaaataaaa
tctgttgacggatttcaaggcagagaaaaagaagctgtagtgctgtcattagttcgctcc
aacagaaaaggtgaggtgggtttccttgcagaagacagacggataaatgttgcggttaca
cgtgcaagacgccacatcgctgtagtgtgtgacactcagacggttgggaatcacgctttc
cttaaatctctgatcgatcacatgactgaattcggtgaggtcagaactgcattcgaatac
ctccaagacattgtgccgcagaactacaccagagaccataaagacacaaagactgctact
gcctgcaaatctagcaaacagaagaacagagaccaggtttcagctaaagcaaaggacggc
cagaaaacgaccagcagcgctaagagcaatacagctggttcacagaatcacgcaaagcag
aacacatcagcacaaaaagaccaaaaagagtccaagattagatacgatgagatcagagca
caggtggagaactttatgaaggatgcaaatatggagaatttacagtttccatcatctttc
aactcccatgaccggctgctggtccaccagatcgctgaggagctgggcctggttcatgag
agcagaggacagggcagcgacaggtgcatcacggtctccaggccgctggcatccaagcct
gccgaggagccagagcaggaggaaacccaggaggaagaaaccgctcccactctgcagagc
gagcaaacaccccaaccttcattagatctcaaagctttacatctagagaggatgaggaga
gagcagcagaaaagagaagaaaacctccagaaaaaaaagcaagagaacagcactaatgga
aaaaagaagtctaaaggaaagagcaaaacgaaggcaggtgtgtgtgagatcgctgctgcc
gcagctccagatgatgactttgatgctcttatcagcgcggtcgtgaaggcggacagcgtt
tgcagctttgtaaagtgtaaagcatctgtattaacgctcggccagctttgcctgttctgc
aacaggcagttctgtctcagtcatcacataccagaggttcacggctgtggagataaggca
aagtctcatgctcggatgagaataagcaaagagggggttctttacgctggcagcgggaag
aaagacaaatctttggaccccaacaagaaagcctatctgcaaagaaaactggactctaag
ctaaaagacatggcatcacaaaggaaaccaaaaaacaaggagaatgacacttaa
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integrated database retrieval system
