Cyprinodon variegatus (sheepshead minnow): 107098431
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Entry
107098431 CDS
T06110
Name
(RefSeq) PDZ domain-containing RING finger protein 4-like
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cvg04121
]
107098431
Enzymes [BR:
cvg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107098431
Ubiquitin system [BR:
cvg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
107098431
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
Tricorn_PDZ
Motif
Other DBs
NCBI-GeneID:
107098431
NCBI-ProteinID:
XP_015251611
Ensembl:
ENSCVAG00000004477
LinkDB
All DBs
Position
Unknown
AA seq
819 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGRDFSKVEHDESVVETIRRDPIVVQVLRRTPTRAT
VVQRNNGSAQDVCVVDVCTQTDITFEHIMALSKLRPATPPVPDICPFLLSDSCQSIHTME
HEFYECPEYLSNTTADVERTEEYEYEEVELCRLNSQDKLGLTLCYRTDDEEDTGIYVSQV
EPNSIAARDGRIKEGDRILQINGFEVQDREKAVALLSSEQAKSITLLVTRPEIQLEEEAV
WLDDEQQQLVEELKMEILEERRKQMEQSFEMADKLQCDGDIMTHTATCSSNNLDSGFGRS
TDSPEHQPLLARLYRRSPAQCLRDRWQSEHQHNKRGNAVSHEAQSTRTHSTSQGNESVVS
IRNGGSGVRGLENCFQQLLELKCQIRNGGECGVYSIRHSIECSLTGQGGGDGESESEGGA
ARGVEQELKMLNEELRSIELECQSIMQAHQLRQSQQLEQSHSAPCSPGMNFKNAHKPHGR
LDDIHEYPERSESDRVREKDSSSAYNTAESARSTPLGMERSPDHSLQRKISITNQKNLRL
ASTASSNPIPIPKPQGTHNPCRPADQGPVISSSPDQSNPSRSESDPALPADDERCDKKGR
NRDSRRALPYGVSYQTGTYHGQGGSKQLQSYMQLLQQHSALEYSQSQLSLLSVCRDPMNR
NGRTGEPRLEWKVKVRADGTRYVARRPARDRILRERALRIREERSGGMTTDDDAMSEMKM
GRYWSKEERKQHLARAREQRKRREFMQKSRLECLKEGPVSGAEGRKEINILELSHKKMMK
KRNKKILDNWMTIQELMSHGARVPEGSQVHNAFLSVTTV
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatttgtgcaccttgcagaaacgagaggaacactacaaactgctctacgag
attgcacaggtgaacgggcgtgacttctccaaggttgaacatgacgaatcagtggttgaa
accatcaggcgagaccccatcgttgtacaagtcctccggcgaacccccaccagagccact
gttgtgcaaagaaacaacggatcggcacaggatgtgtgcgtggtcgacgtctgcacacaa
acagacatcacctttgagcacatcatggcattgtccaagctccgaccggctaccccgcca
gtcccagacatctgtccattcctgctctcagacagctgtcagtccatccacaccatggaa
catgagttttatgaatgtccagagtacctttctaatactacagcagacgtcgagaggact
gaggaatatgagtatgaggaagtggaactctgtcggctgaacagccaggacaagctcggt
ctgactctctgctaccggactgatgatgaggaggacactggtatttatgtcagccaggtg
gagccaaacagcatagctgctagagacggacgcattaaggaaggagatcgcattctgcag
ataaatggctttgaagtgcaagaccgggagaaagctgttgcgttgttgtcaagcgaacag
gcaaagagcatcacacttctggtgacaaggccagagatccagctagaggaggaggcagtg
tggctggatgatgagcaacaacagcttgttgaagagctgaagatggagatattagaggag
aggaggaagcagatggaacaaagctttgaaatggcagataagcttcagtgtgatggggac
attatgacgcatacagcaacctgttcttccaacaatcttgacagtggatttgggcgcagc
acagacagccctgagcaccaacctttattggcaagactctataggaggagtccagcccag
tgtctaagggatcgatggcagtcagaacatcagcacaacaagcgagggaatgccgtgtca
cacgaagcccagagcacaagaacccattcaacaagccaaggcaatgaaagtgtagttagt
attcggaatggtggatctggagtccgaggtttagagaattgctttcaacagctcttagaa
ctcaagtgccaaatccgtaatggaggtgaatgtggggtgtactctattcgacacagtata
gagtgtagtctcactggacaaggtggaggggatggagagagtgagagtgaaggtggcgca
gcgagaggggtagagcaggagttaaagatgctaaacgaagagcttcgtagcattgaatta
gaatgccagagcattatgcaagcccatcagctacgacagtctcagcagcttgagcaatcc
cactctgcaccctgctcaccaggaatgaactttaaaaatgcacacaagccacacgggagg
ctggatgatattcatgaatacccagagagatctgaaagcgatagagttcgtgagaaggac
agctctagcgcctacaacacagcagagagtgctaggtcaaccccactaggaatggaaaga
tcccctgatcattccctgcagagaaaaataagcatcaccaaccagaaaaacctcagactg
gcatccactgcatcatccaatcccattcctattcccaagcctcagggtacacataatcct
tgcagaccagcagatcaaggtccagttatctctagcagccctgaccagagcaatccttca
cggtctgagtcagacccagcactaccagctgatgatgaaaggtgcgacaaaaagggaagg
aacagagactcaaggagagctcttccctatggggtttcatatcagacaggcacttatcat
ggccaggggggatccaaacaacttcagagctatatgcagctgttgcagcagcactccgct
ctagagtactcgcaaagccagctgagcctcctcagtgtgtgtcgagatcctatgaaccgt
aacggacgaacaggggagcctcgcctggagtggaaagtcaaagttcgtgcagatgggaca
cgttatgttgcacgcagacctgcccgtgaccgtatactgagagagcgggcacttcgaatc
agagaagagaggagtggaggcatgaccacagatgacgatgcaatgagtgagatgaaaatg
ggccgctactggagcaaggaggagaggaagcagcatttggcgagggccagggagcaaaga
aagaggagggaattcatgcagaaaagccgtcttgaatgcttaaaggaaggaccagtgagt
ggagctgaaggcagaaaggagatcaatatcttggaactcagtcacaaaaaaatgatgaaa
aagcgtaacaaaaagattctggacaactggatgaccatccaagagctgatgagccatggt
gcaagggtcccagagggctctcaagttcacaatgcctttctttctgtcaccactgtttaa
DBGET
integrated database retrieval system
