Chromobacterium violaceum: CV_1146
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Entry
CV_1146 CDS
T00147
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cvi
Chromobacterium violaceum
Pathway
cvi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CV_1146 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvi03400
]
CV_1146 (mfd)
Enzymes [BR:
cvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CV_1146 (mfd)
DNA repair and recombination proteins [BR:
cvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CV_1146 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
AAQ58821
LNCC_Brazil:
CV1146
UniProt:
Q7NYX6
LinkDB
All DBs
Position
complement(1201342..1204734)
Genome browser
AA seq
1130 aa
AA seq
DB search
MDTLTHLPPAGQKTRCGRLPDGLDSHAIAALAKQRRPLLILAADAQAAQRLKAELPFFAP
DLSIALFPDWETLPYDHFSPHGDLVSERLATLWQIRQRECQVVIAPVSTALGRLAPVSYL
LGRTFFLKTGQQLDVEKLRGDMVTAGYQHVTQVMAPGEFSVRGSLIDLYPMGSPLPYRID
LFDAEIDSLKTFDPDTQRTLYPVPEVRMLPAREYPADESGVTAFRQRYREKMEGDPSKSR
VYKDVSQGLWPAGIEYYLPLFFDETATLFDYVGDDALVVQHHDVQAAAETFWRDAQSRYD
MARGDVDRPVLAPADIFLRPDELMARLKPYARIEFAGDGETGAALPELAVDRRAEAPLHK
LQRFIASGGKRVLLAAESLGRRETMLAFLAENGIKPTPVDSWADFAGGKAALALAVAPLY
SGFMLADPAIAVVTESELYQHVARSHTRRKAGRAGSDAMLRDLAEVKAGDPVVHEAHGIG
RYVGLVTMDLGEGETELMQLEYADGATLYVPVSQLQLISRYAGGATDDIQLHKLGNPAWE
KAKKRAAEKARDTAAELLNLYAQRAAREGHSFTLSHADYAAFAAGFGFEETPDQATAIEA
VIQDMCSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLVPTTLLAEQHFQNFSD
RFADWPVRIAELSRFRSGKETKAALAGLADGGVDIVIGTHKLVQPDVAFKNLGLVIIDEE
HRFGVRQKEQLKRLRANVDVLTLTATPIPRTLSMALEGLRDFSAIATAPSRRLAVKTFVS
PLSNGVVREAVLRELKRGGQVFFLHNEVDTIENMREKLAELIPEARIGVAHGQLRERELE
QVMRDFLQQRFNLLLCSTIIETGIDIPNANTILINRADKFGLAQLHQLRGRVGRSHHQAY
AYLLTPDGMTRDAQKRLEAIQLSGELGAGFYLAMHDLEIRGAGEVLGEGQSGEMQEVGFS
LFTEMLKQAVRDLKKGRAPDLDAPLGVTTEINLHSPALLPDGYCPDVHERLLIYKRLASC
ETEAEIDDIHEELIDRFGLPPQSVKTLIESHRLRLVAKELGVQKLDASEVAVQITFIKNP
PIDPVKIIMLIQSKKHYRLAGQDKLRVEQALPEVAQRIVKVKEVLKELSA
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
ttggatacgctcacacacctgccacccgccggccagaaaacccgatgcggccgtctgccg
gacggcctggacagccacgccatcgccgcgctggccaagcagcgccgcccgctgctgatc
ctggccgccgacgcccaggccgcgcagcggctgaaggccgaactgccgttcttcgcgccc
gatctctccatcgcgctgtttcccgactgggaaacgctgccctacgaccacttctctccg
cacggcgacctggtcagcgagcggctggccaccttatggcagatccgccagcgcgaatgc
caggtggtgatcgcgccggtcagcaccgcgctgggccggctggcgccggtgagctacctg
ctgggccgcaccttcttcctgaaaaccggccagcagctggacgtggaaaagctgcgcggc
gacatggtcaccgccggctaccagcacgtcacccaggtgatggcgccgggcgaattctcg
gtgcgcggcagcctgatcgacctgtacccgatgggttcgccgctgccgtaccggatcgac
ctgttcgatgccgagatcgacagcctgaagaccttcgaccccgacacccagcgcacgctg
tacccggtgcccgaagtgcgcatgctgccggcgcgcgagtatccggccgacgagagcggc
gtcaccgccttccgccagcgctaccgcgagaagatggaaggcgatccgagcaagagccgc
gtctacaaagacgtgtcgcagggcctgtggccagccggcatcgagtactacctgccgctg
ttcttcgacgaaaccgcgacgctgttcgactacgtcggcgacgacgcgctggtggtgcag
caccacgacgtgcaggcggcggcggaaaccttctggcgcgacgcgcaaagccgctacgac
atggcgcgcggcgacgtcgaccgcccggtgctggcgccggccgacatcttcctgcgcccg
gacgaactgatggcccggctcaagccctatgcccgcatcgaattcgccggcgacggcgaa
accggcgccgcgctgccggagctggcggtggaccgccgcgccgaggcgccgctgcacaag
ctgcagcgcttcatcgccagcggcggcaaacgcgtgctgctggcggcggaaagcctgggc
aggcgcgaaaccatgctggccttcctggccgaaaacggcatcaagccgacgccggttgac
agctgggccgatttcgccggcggcaaggcagcgctggcgctggccgtcgccccgctctac
tccggcttcatgctggccgatccggccatcgccgtcgtcaccgaaagcgagctctaccag
cacgtcgcccgcagccacacccgccgcaaggccggccgcgccggctcggacgcgatgctg
cgcgacctggccgaggtcaaggccggcgacccggtggtgcacgaggcccacggcatcggc
cgctacgtcggcctggtgaccatggacctgggcgagggcgaaaccgaactgatgcagctg
gagtacgccgacggcgccacgctgtacgtgccggtgtcgcagctgcagctgatctcccgc
tacgccggcggcgccaccgacgacatccagctgcacaagctgggcaacccggcctgggaa
aaggcgaaaaagcgggccgccgagaaggcgcgcgacaccgcggccgagctgctgaacctg
tacgcgcagcgcgcggcgcgcgaaggccacagctttaccctgtcccacgccgactacgcc
gccttcgccgccggcttcggcttcgaggagacgccggaccaggccaccgcgatcgaggcg
gtgatccaggacatgtgctccggcaagccgatggaccggctggtctgcggcgatgtcggc
ttcggcaagaccgaagtggcgctgcgcgccgccttcgtcgccgtgatgggcggcaagcag
gtggcggtgctggtgcccaccacgctgctggccgagcagcacttccagaacttctccgac
cgcttcgccgactggccggtgcgcatcgccgagctgtcgcgcttccgtagcggcaaggaa
accaaggctgcgctcgccggcctggccgacggcggcgtcgacatcgtcatcggcacccac
aagctggtgcagccggacgtggcgttcaagaacctgggcctggtgatcatcgacgaggag
caccgcttcggcgtgcggcagaaagagcagctgaagcgcctgcgcgccaatgtcgatgtg
ctgacgctgaccgcgacgccgatcccgcgcacgctgtcgatggcgctggaaggcctgcgc
gacttctccgccatcgccaccgcgccgtcgcgccggctggcggtgaagaccttcgtcagc
cccttgagcaacggcgtggtgcgcgaggcggtgctgcgcgagctgaaacgcggcggccag
gtgttcttcctgcacaacgaggtcgacaccatcgaaaacatgcgcgaaaagctggcagag
ctgatcccggaggcgcgcatcggcgtcgcccacggccagctgcgcgaacgcgagctggaa
caggtgatgcgcgacttcctgcagcagcgcttcaatctgctgctgtgctccaccatcatc
gaaaccggcatcgacatccccaacgccaacaccatcctgatcaaccgcgccgacaagttc
ggcctggcgcagctgcaccagctgcgcggccgcgtcggccgctcgcaccaccaggcctat
gcttatctgctgaccccggacggcatgacccgcgacgcgcagaagcgtctggaagccatc
cagctgtccggcgagctgggcgcgggcttctacctggcgatgcacgatctggaaatccgc
ggcgccggcgaggtgctgggcgaaggccaatccggcgaaatgcaggaagtgggcttcagc
ctgttcaccgagatgctgaagcaggcggtgcgcgatctgaaaaagggccgcgcgccggac
ctggacgcgcccttgggcgtcaccaccgagatcaatctgcacagcccggcgctgctgccg
gatggctattgcccggacgttcacgagcggctgctgatctacaagcgcctggccagttgc
gagaccgaggccgagatcgacgatatccacgaagagctgatcgaccgcttcggcctgccg
ccgcagagcgtgaagacgctgatcgaaagccaccgcctgcgcctcgtcgccaaggagctg
ggcgtgcagaagctggacgccagcgaggtggcggtgcagatcaccttcatcaagaacccg
ccgatcgacccggtgaaaatcatcatgctgatccagagcaaaaagcattaccgcctggcc
gggcaagacaagctgcgcgtcgagcaggcgctgccggaggtggcacagcggatcgtgaag
gtgaaggaggtgttgaaggagttgagcgcctag
DBGET
integrated database retrieval system
