Chloracidobacterium validum: J8C06_08120
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Entry
J8C06_08120 CDS
T07355
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
cvl
Chloracidobacterium validum
Brite
KEGG Orthology (KO) [BR:
cvl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvl03400
]
J8C06_08120
Enzymes [BR:
cvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J8C06_08120
DNA repair and recombination proteins [BR:
cvl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
J8C06_08120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_22
AAA_30
DEAD
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QUW02320
LinkDB
All DBs
Position
1:complement(1946427..1950266)
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AA seq
1279 aa
AA seq
DB search
MTIALDPTTGFTPAQQRAVETLDGSVVVTAGPGAGKTRVLTERFLRLLEQPGVGVENIVA
ITFTNKAANEMRERIRQRIEARIAAHLGTGAELQWRQRKRQLEAAAIGTIHGFCSRLLRE
FPLEAGVDPYFSTLDEYTATALLDLAAQQVVTAEIDSGGPLAAELVAAYGRAELVAALKQ
VFNQLRSLGVTLDEAEHLTRQKTLTPDDYEKRYRETDGWVEALRTLVVEEGQPQKPSKTL
EAAQRFLEAWAQERDLIEPAPTPEQMPAFLAALARLRAALPDARGKFSQPVKSLQAWLGT
RSQGGGQLEAAYLDVCARDYQQVVFKLLRGIDFLYSQAKRESAALDFEDLQLRARHLLGS
EDIRRRVRLRYRHFLVDEFQDTNHLQRDILDALGAAAGPCSGQTFFFVGDRKQSIYAFRG
AEVEVFDEVLKAAAAQGGKHLRLDVNFRSDPRLVAFFNAFFSRVMQLPAGSEPSQLYRSG
FVDYEPGQAFRPPLDAERPAVAFLYTAVPKPEQGRSPYDDSRRDIEAARLADYVRHLVEA
QVPLVNTADGKPRPPTYRDMALLLGALTDVKAYERAFRRAGVPCYIVAGHGFYGRPEVND
LLTLLEFLDNRADDIALAGVLRSPLFGLSDETLLRLRWAAGESVARRSSLYSDLRLEARQ
KKAALPDDQRPLLEEAVTILDELLAVRNRLPLPTLLEQVIRRTGYDIVCAAAEDGPQRLS
NLDKLVSLARGFARREAHLLRDFVSYIREFRRLDAREAEAQLELGLDAVALLTIHKSKGL
EFPIVLLPDLQRRWHQTSGRFVFERNGGLGFEIPDTLGGLRQTEMKAQVLKWLERREQFE
RMRQLYVAMTRAQDYLVLSAAEEATDRSPAEGSARCFLDWIKATLPLPAEPVVTTLALDD
AQVAFLGTDAPDRPAPAPSAPVVDEPPSRAVFVKQAERDARQRERDRRNLIRDLDDQLAP
IQPDPAAASGWYRYTARQLASFANCPRQYYFARLLHPLGEDVVGGARPDEDVERPEAEAR
LAPAARGLIIHRLCETLEPEDETPAALRRALHAAITFLRAAGHLEAVTLDDDAILRDVWW
LAQRYAQSAMRRQIDTVRRASRTDARYAIWNEREFIVRCDAALLVGVMDKVLVTPSATGS
GVTAHVVDFKTNAFKARPAEPGFEAELAEKVAQYRLQLQTYALALWELTPNVREVRATLH
FLAPDRSFELPLEQVTRAAVRRVVGNTVQELIAIQTFAATDVQAKPGARCLVCRYAAVCA
DALREEPVADRQADAPPRL
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atgacgattgcgcttgatcccacgaccggtttcacccccgcccagcaacgcgctgtcgaa
acgctcgacggctcagttgtggtgacagccggacccggcgccggaaaaacccgcgtcctg
accgagcggtttctgcgcttgctcgaacagccaggcgtcggcgtcgaaaacatcgtggcc
attaccttcaccaacaaagcggccaatgaaatgcgcgaacgcatccggcaacgtatcgag
gcccggattgcagctcatctcggcacgggagccgaacttcagtggcggcagcgcaagcgc
cagctcgaagcggccgccatcggcactattcacgggttttgttcccggctgctgcgggag
ttcccgctcgaagccggggttgacccctacttttcgacgctggatgaatacaccgcgacg
gctctcctcgatttggctgcccaacaggtggtgacggccgagattgatagcggtggaccg
ttggcggccgagctggtggcggcctatggccgggccgaactcgtcgccgccctcaagcag
gtattcaaccaactgcgcagtctaggggtgacgctggatgaagccgaacacttgacccgg
caaaagacgttgacccctgatgattatgagaagcgctaccgggaaaccgacggctgggta
gaagccttgcggacgctggttgtggaggaagggcagccccaaaagccatccaaaacactc
gaggcggctcaacgcttcctggaagcctgggcgcaagagcgtgacctgattgagccggct
ccgacaccggaacagatgccggccttcctggctgcgctggcgcgtctgcgggcggcgctg
ccggacgcgcgcggtaagttcagccaaccggtcaagtcactccaggcctggctggggaca
cgcagccaaggcggcggtcagctcgaggccgcttacttggacgtgtgcgcgcgcgattac
cagcaggtggttttcaagctgctgcgcggcatagattttctctacagccaggcgaaacgt
gagtcggcggcgctcgactttgaggatttgcagctcagggcgcgccatctgcttgggtcg
gaagacatccggcggcgcgtccgtctgcgttatcgccactttttggtggatgagttccag
gataccaaccaccttcagcgggacattctggatgcccttggcgcggccgccgggccgtgt
tcggggcagacgtttttctttgtcggcgaccggaagcaatccatttacgctttccggggg
gcggaggtcgaggttttcgatgaagtcctgaaagcggcggcagcgcaggggggcaagcat
ctccgcctggatgtcaacttccgtagcgatccccgcctggttgctttcttcaatgccttc
ttcagccgcgtgatgcagctcccggccgggagcgagccgagtcaactgtatcggagcggc
ttcgtggattatgagccggggcaggcctttcgtccgccgctcgatgctgaacgcccggct
gtggcgtttctctacacagccgtcccaaagcccgaacagggacggtcaccctacgacgac
tcacgacgtgacatcgaggcagcgcgactggcggattacgtccgccatctggtggaagca
caggttccgctggtcaacacggcagatgggaagccgcgtccgccgacctaccgcgacatg
gcgctgttgctgggcgcgctgacggatgtcaaagcctacgaacgcgccttccgccgggcc
ggcgtgccgtgctacatcgtggccggccacggtttttacgggcggccggaagtcaacgac
ttgctgacgttgctggagtttcttgacaaccgcgccgacgacatcgccctggctggcgtc
ttgcggtcgccgttgtttgggctgtcggatgaaaccttgctgcggttgcgctgggcggct
ggtgaaagcgtggcgcgccggtcatcgctttacagtgacctacgcctggaagcgcggcaa
aaaaaagcggcgctcccggacgaccagcgcccgttgctggaagaggcggtaacgattctg
gacgagctgctggccgtccgaaaccggttgccgctcccgaccctgctcgaacaggtcatt
cgccgaaccggctacgatattgtctgcgcggcggctgaagacggcccgcaacggttgtcg
aatctcgacaagctcgtgtcactggcccgtgggttcgcgcgccgtgaagcgcacctgctg
cgcgatttcgtcagttacatccgtgaatttcgccgccttgacgcccgcgaggccgaagcc
cagctcgaactcggcctcgacgccgtggcgctcctgacgatccacaagtcgaaggggctg
gagttcccgattgtgttgctcccggatttgcagcgtcggtggcatcaaacgtccggtcgg
ttcgtttttgagcgcaacggcgggctgggttttgagattccagacacgttgggcggtttg
cgccaaaccgaaatgaaggcgcaggtactcaagtggcttgagcgccgggagcagtttgag
cggatgcgccagttgtacgtcgccatgacgcgcgcgcaggactacctagtgctttcggcc
gccgaagaagccactgaccgaagtccggccgaaggctctgcccggtgttttctggattgg
atcaaagccacgctgccactgcccgctgagccggttgtgacgacgcttgctctggatgac
gcgcaggtggcctttctgggtacggatgcgccggaccgtcccgcgcccgcgccgtccgct
ccggttgtggatgagccacccagtcgagcggtcttcgtcaagcaggcagaacgtgacgcc
cggcagcgcgaacgcgaccggcgcaacctcatccgtgaccttgacgaccaactggcgccc
atccagcccgacccggccgcggccagtggttggtatcgctacacggcgcgtcagttggcc
agtttcgccaactgtccgcggcaatactacttcgcgcgattgttgcacccgcttggggaa
gacgtcgttggcggcgcgcggccggacgaagacgttgagcgcccggaagccgaggcgcgg
ctggcgccggccgcgcgtgggctgatcattcatcggttgtgcgaaaccctggagcccgag
gatgagactccggcggcgctgcgtcgggcactgcacgctgcgattacctttctgcgcgcc
gccggccatctggaagccgtcacgctggatgatgacgccatcttgcgggatgtatggtgg
ctggcgcagcggtacgcccagagtgcgatgcgccggcagattgataccgtacggcgcgcc
tcccgcacggatgcgcgttatgccatttggaacgagcgcgaattcatcgtgcgatgcgat
gcggcgctgctggtgggcgtgatggacaaggtactggtgacgccgtccgcgaccggatcg
ggcgtgacggcccatgtggtggatttcaagaccaatgcgttcaaggccaggcccgccgag
ccgggctttgaagccgaactggccgaaaaggtcgcccagtaccggcttcagttacagacc
tatgcgctggcgctgtgggagctgacgccaaacgttcgggaagtacgcgcgacgctgcac
tttcttgctccagaccgcagcttcgagctgccactggagcaggtcacccgcgccgccgtc
cggcgggtggtcgggaacaccgtccaggagttgatcgcgattcagacgtttgccgccacc
gacgttcaagccaagccgggcgcgcggtgtttggtgtgtcgttacgcggcggtttgcgcc
gatgcccttcgtgaagagccggtcgccgaccgccaagccgacgccccaccgcgattgtag
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