Crassostrea virginica (eastern oyster): 111120024
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Entry
111120024 CDS
T09197
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111120024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111120024
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111120024
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111120024
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111120024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCHC
zf-CCCH_2
zf-CCCH_3
zf-CCHC_3
zf-C3H1
zf-CCCH_4
zf-CCHC_2
zf-C2H2_10
Motif
Other DBs
NCBI-GeneID:
111120024
NCBI-ProteinID:
XP_022316363
EnsemblRapid:
LOC111120024
UniProt:
A0A8B8CKJ1
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All DBs
Position
2:37799663..37804622
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AA seq
282 aa
AA seq
DB search
MQALVAPVSHIKFEMEIALDQQLGSQPLPFPGMDKSGAAICTFYLSNVCSKGTACPYRHV
KGDRTVVCKHWLRGLCKKGDDCEFLHEFDMSKMPECYFFSKFGECNNKECPFLHIDPSAK
IKDCPWYDRGFCRHGPNCKNRHVRRILCQCYLNGFCLEGPKCKYMHPSFDIPVFDQQTTT
KKVNIVCHFCSEPGHKALNCPKMKTPDTDKINVIQTTVDSNPHSGFGHHPHFPYKPASGQ
DNYIDPRRPLDQVTCFKCGEKGHYANKCPKGHLAFLASSSGS
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcattagtggctcccgtttcccacatcaaatttgaaatggaaattgctctagat
cagcagttaggttcacaaccccttccatttccaggaatggacaaatctggagcagcaata
tgtacattttacctaagcaatgtgtgcagcaaaggaactgcctgtccatacagacatgtg
aaaggagatcgaactgtagtgtgcaagcactggctcagaggactttgtaagaaaggagac
gactgtgaatttcttcacgagtttgacatgagtaaaatgccagagtgttactttttctcc
aaatttggtgaatgtaataataaggagtgcccttttttacacattgacccatctgcaaaa
atcaaagactgtccgtggtatgatagagggttctgtagacatgggccaaactgcaagaat
cgacatgtgagaagaatattgtgccagtgctatctcaatgggttttgtttagaaggacca
aagtgtaaatatatgcatcccagttttgatattcctgtttttgatcagcaaacaaccact
aagaaagtcaacatagtgtgtcatttctgctcagagccaggtcacaaagccctgaactgt
cccaaaatgaaaactcctgacacagataaaatcaatgttatacagactacagtggacagt
aatccacactcaggatttggtcaccacccacatttcccttacaagccagcgtcgggccag
gataattacatcgatccaagacgaccacttgaccaggttacctgtttcaagtgtggagaa
aaagggcattatgcaaacaagtgtcccaagggccatttagccttcctggcctcctcttca
ggcagctga
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