Crassostrea virginica (eastern oyster): 111124756
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Entry
111124756 CDS
T09197
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM56-like isoform X1
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cvn04121
]
111124756
Enzymes [BR:
cvn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
111124756
Ubiquitin system [BR:
cvn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
111124756
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_4
zf-B_box
FYVE
DUF3583
HSCB_C
Motif
Other DBs
NCBI-GeneID:
111124756
NCBI-ProteinID:
XP_022323627
EnsemblRapid:
LOC111124756
UniProt:
A0A8B8D662
LinkDB
All DBs
Position
3:7817517..7829238
Genome browser
AA seq
785 aa
AA seq
DB search
MSTETLGDPNWAVQQLKVQFRFRRNSALRCTSMELEQSELVIPRQLLCCKLCDEEFTKPC
YLPCLHTFCQKCIHDHRQSSTDEEGYFPCPTCMTEVGPEEEDGALGNLPENVLARRLSVP
SLDPVKRETLCFYCKNAGNFVEGKTHCVTCDEFLCNACADSHTTQEEFEDHQLQSEEDYS
THLEKSSSTASLGQQVLPVCCEAYDPLDIGAMFCVECDVSVCADCHVNEHAEHRCAELTA
IAQHFETKIKEPLEELDNDSMEISEFLENLDSTEQTILEQKDSLKQNVKERTKQLCSLIK
DYQKLLLDDIERRFDNQLEDIKTRRLDLEMHLEAIRGVKDFTNNLITYGSYEEKVHLRKK
VGYRIRELCEESLGTDPIEIPSVTLMEPNVTVDTICDMFGTIATGDEPVAKEQETKEDLP
TSQHFQRYHSFGDSGHGSDSMEQAETEPELVEIFEKTPRELHRQDSKQDGSDTDMLSSSN
SSDKIKNVKFREQVQQNEFENDNAFNLENPKREVTLPAPIQKECIKGIGINEKGDIIVGT
TSTIHVLEKRGIVRGQIPLENGWNIHSVSSDGKVSMTVPRGDNRFKVRVLKNDGTGHILS
DFNVESFGLNFVTSDHSGTLIITSNRYAQIHKSHGKAAKSGGNIAFYGPDGHLIRRITNE
DFHANLLEKPQMVVVDEKRHKTYVADPGSHRVIALNADGELVFEYGNQEGQEEIYQGPDL
ISIDKYGNIIITDKREGRIDILGPKGTLKKSFYMDDIPRFVGATPDKLLVTAMPDGNMKF
YDYLN
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgaaactcttggagatcccaactgggctgtgcaacagctcaaagttcaattt
cgatttaggagaaattcggcactgagatgtacgagcatggagctggagcaatcggagctg
gtgatcccgcgacaactgctctgctgtaagctgtgtgacgaggagttcaccaagccctgc
tatctgccatgtctacacacgttctgtcagaagtgtatccacgaccaccggcagagcagc
accgatgaggagggctacttcccgtgcccaacatgcatgaccgaggtcggtccagaggaa
gaagacggggcacttggaaatcttccagaaaatgttctggctcgccgattgtcggtccct
tccttagacccggttaagagagaaaccttgtgtttttactgtaagaatgcggggaacttt
gtggaaggtaaaactcactgcgttacctgtgatgagtttctgtgcaatgcctgtgcggac
tctcacacgactcaggaggagttcgaggaccaccagctgcagagtgaggaggactacagc
acacacctggagaagtcctccagcaccgctagtctcggtcagcaggtgctccccgtgtgc
tgcgaggcctacgacccactagacataggtgccatgttctgtgtggagtgcgacgtgtct
gtgtgtgcggactgtcacgtgaacgagcacgctgagcacagatgtgctgaactcaccgcc
attgcgcaacattttgaaactaaaataaaagaacccttagaggaactggacaatgattct
atggaaattagtgagtttctggagaatttagattcaacggagcaaactattctggagcaa
aaagattcactgaaacaaaatgtgaaggagcgcactaagcagctgtgtagtctgatcaaa
gattaccagaagctcctcctggatgatatagagcggcgattcgacaaccagctggaagat
atcaagaccagaaggttagatctagaaatgcatttagaggccataagaggagtgaaggac
ttcacgaacaacttgatcacgtatggatcgtatgaggagaaagtccatctcaggaagaaa
gtaggatacagaattcgggagctgtgtgaggagtccctgggtactgatcccatagaaatc
ccatctgtcacgctaatggagcccaatgtgactgtggacacaatctgtgacatgtttggc
accatcgcgacaggagacgagccggttgctaaggagcaggaaaccaaggaagacctccca
acctctcagcatttccagcgctaccacagcttcggagactcgggtcacggcagtgactcc
atggagcaggcagaaactgaaccagagctggtggagatctttgagaaaactccgcgggag
cttcatcgtcaggacagcaaacaggacggatcggacacagacatgctgagctcgagtaac
tcaagtgacaaaatcaagaacgttaaattcagggaacaggtccagcaaaacgagtttgaa
aatgacaatgcgtttaacttggagaatcccaaaagggaagttactctccctgctccaatt
cagaaagagtgtatcaaaggaatcgggataaatgagaaaggggacattattgttggaaca
acaagcacgattcacgtcctagaaaaacggggaatagttcgagggcagattcctctggaa
aacggctggaacattcactcagtgtccagtgatggaaaagtttccatgacagtgcctcga
ggtgacaatagattcaaagtgcgcgtcttaaagaatgatggaacagggcacattttgtct
gatttcaatgtggagagttttggactgaatttcgtgacaagcgatcattccggtaccctt
atcatcacttccaaccgctacgcccaaatccacaaaagtcacggcaaagctgcaaagtcg
ggtggaaacattgccttctacggccctgatgggcatctgattcgccgcatcaccaacgag
gatttccacgcaaacctcctagaaaaacctcagatggtggtggtggatgagaaacgccac
aaaacctacgttgctgaccccggcagccacagggtcatcgctctaaatgccgacggagaa
ctcgtgttcgagtacggcaaccaagagggtcaggaggagatctaccagggtcctgacctc
atctctatcgacaaatacggcaacatcatcatcaccgacaagagagaggggaggatcgac
attctgggacccaagggaaccctcaagaagtccttctacatggacgatattccacggttc
gtcggagctaccccagacaaactcttagtcacagccatgcctgatggaaacatgaagttc
tatgattacctgaactaa
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