Crassostrea virginica (eastern oyster): 111129063
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Entry
111129063 CDS
T09197
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03013
Nucleocytoplasmic transport
cvn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111129063
03015 mRNA surveillance pathway
111129063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111129063
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111129063
5.6.2.5 RNA 5'-3' helicase
111129063
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111129063
mRNA cycle factors
Common to processing body (P body) and stress granule
111129063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
Helicase_RecD
UvrD-helicase
Viral_helicase1
nSTAND3
AAA_16
ATPase
AAA_22
SRP54
PhoH
AAA_10
Motif
Other DBs
NCBI-GeneID:
111129063
NCBI-ProteinID:
XP_022330846
EnsemblRapid:
LOC111129063
UniProt:
A0A8B8DV27
LinkDB
All DBs
Position
4:complement(7230243..7242735)
Genome browser
AA seq
1108 aa
AA seq
DB search
MSVDAYAPNSQSLTFLETEEDFIGADTQGTDYDYTDFTLPSQTQSQTQASQLEHGQSQSQ
VNGPETPIQNGLDKGVATIAQGVGELNFEEEEEEQFMMKDLPKHACSYCGIHDPASVVFC
NSTKKWFCNGRGNTSGSHIINHLVRAKAKEVTLHKDGPLGETVLECYNCGCRNVFLLGFI
PAKADSVVVLLCRQPCATLTNLKDMNWDPSQWQPLIQDRQFLSWLVKVPSDQEQMRSRQI
SAQQINKLEELWKDNPEATLEDLEKPGVDEEPNQVLLRYDDAYQYQNIFGPLVKLEADYD
KRLKESQTQDNIVVRWDVGLNKKRIAFFHLPKANDEMKLMHGDELRLRYQGELHKPWSGV
GHVIKIPDNHSDEVAIELKSNAGVPSECTHNFVVDFVWKSTSFDRMQAALKTFAVDETSV
WGYIYHKLLGHEVEDVVIKCQLPKRFSVPNLPELNHSQVYAVKTVLQRPLSLIQGPPGTG
KTVTSATIVYHLVKQNNGQVLVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAIDSPVS
FLALHNQIRNMESVPELQKLQQLKDETGELSSTDEKRYRSLKKQCEKELLQHADVICCTC
VGTGDPRLAKMQFRSVLIDESTQATEPECMIPVVLGCRQLILVGDHCQLGPVVMCKKAAR
AGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVAPGDRTRKGLDI
PWPQGDKPMFFYTTSGQEEISSSGTSYLNRTEAANVEKIATRFLRSNVKPEQIGIITPYE
GQRAYIVQYMQYSGSLNKKLYQEIEVASVDAFQGREKDFIILSCVRSNEHQGIGFLNDPR
RLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLTYYKEQKCLVEGPLNNLKESMIQFSKPR
KLVNTSNPGGRFMSNIMFDAREVLIPGSVYDRNRGYNEPVVRTHDQLSYIGPERQYTGPA
LNIPVPVNMFMPPMPQPFNGQPMPMGNRNAPANRGSGRRRGQRPPRYSNTQSQQNSSQFS
QGNSQSLASQDVSQPFSQGPLTQGPMSMSQPFQMSQPGLSGLSQPELSQDSFLADDFKSQ
ADGMLSQDSTYQGDRMFYASQLSQGPFN
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggacgcatatgccccaaattcccaatccttgactttcctcgaaaccgaagag
gatttcattggggccgacactcaaggaaccgactatgactacacggatttcacccttcca
tcacagacccagtcacagacccaggcatcccaacttgaacatggacaaagtcaaagccag
gttaatggtccagagacccctatccagaatggcttggataaaggtgttgcaacgattgca
cagggggtgggggagctcaactttgaggaggaagaggaagagcagtttatgatgaaggat
ctaccaaagcatgcttgctcgtactgtggaattcatgatccagcttcagtggtgttttgc
aacagcaccaagaagtggttttgtaatggaagaggaaatacatctggaagtcacatcatc
aaccatctagtaagagcaaaagcaaaggaagtgacactgcacaaggatggtcccctggga
gagacagttctggagtgctataactgtggatgcaggaatgtcttcctgctggggttcatc
cccgccaaggccgactctgtggtggttctcctgtgtcgccagccctgtgccactcttacc
aacctgaaggacatgaactgggacccgagtcaatggcagcctttgattcaagacagacag
ttcctgtcttggctggtcaaagtcccatcagaccaggaacagatgaggagccgccagatc
tcagcacagcagattaacaagctggaggagctgtggaaagacaacccagaggccacgttg
gaggatctagaaaagccaggagtggatgaggaaccaaaccaggtgttgctaagatatgat
gatgcttatcaataccagaacatctttggacctcttgtgaagttggaagctgattatgac
aagaggttgaaggaatcccaaacccaggacaacatagtggttaggtgggatgttggactg
aacaagaaaagaattgcctttttccaccttccaaaagccaatgatgagatgaaattaatg
catggagatgaattgagacttcgttatcagggagagctgcacaaaccttggtctggtgtt
ggacatgtcatcaagattccagacaaccatagtgatgaagttgccatagaactgaaaagt
aatgcaggagttcccagtgagtgcactcataactttgtggtggattttgtttggaagtca
acgtcatttgacaggatgcaggcagcattgaagacctttgctgtggatgagacatctgtt
tggggatatatctatcacaaacttctgggacatgaggtggaggatgtggtcatcaagtgt
cagctgcctaagagattcagtgtccccaacctcccggagctgaaccactcccaagtgtac
gccgtcaagacagtccttcagcggccacttagcctcatccagggccccccaggaacgggt
aagactgtgacctcggctacgattgtgtaccacctggtgaagcagaacaatggccaggtg
ttagtctgtgctccctctaacattgccgtggaccagcttacagagaagatccacaaaaca
ggactgaaggttgtacgtctgtgtgcaaagagcagagaagctattgattcacctgtgtcc
ttcttggctcttcataaccaaattagaaacatggaaagtgtgcctgagttacagaaactg
cagcagctgaaggatgagacaggagagctgtcctccactgatgagaagagatacaggtcc
ctgaagaagcagtgtgaaaaggagcttctacagcatgctgatgttatctgttgtacatgt
gtgggaactggggatcccagattggccaagatgcagttcagatcagtgctgattgatgag
agtactcaggccacggaaccagagtgtatgattcctgtagtgctaggatgcagacagttg
attttggtgggtgaccattgccagcttggacccgtggtgatgtgtaagaaggcggcccgt
gccggactgtcccagtctctgtttgaacggctggtggtgttgggcatcagacccatacgt
ctacaggtccagtacagaatgcaccccgctctcagcgctttcccatccaacatcttctat
gaaggatctctgcaaaatggagtagcacctggtgaccgcacaaggaaaggacttgacatc
ccttggcctcaaggagacaaacccatgttcttctatacaacatctggacaagaggaaata
tcaagttctgggacttcttatctaaataggactgaagcagcaaatgtggagaagattgcc
accagatttttgagatctaatgtcaaaccagagcagattggtatcattactccttatgaa
gggcaaagagcttacattgtgcagtacatgcagtacagtggatcattgaacaagaagctg
tatcaggagatagaagtggctagtgttgatgctttccaaggaagagaaaaagatttcatc
attctgtcttgtgtacgttccaatgaacatcaaggaattggttttttgaatgacccaagg
cgcctcaatgtggctttaactcgagcaaaatatggaattatcatcgttggaaatcccaag
gttttatcaaagcaacccctttggaaccacctgttgacttactacaaggagcagaagtgt
ctggttgagggccctctgaataatttgaaggagagcatgattcagttcagcaagccccgc
aaactggtcaacacctctaatcctggaggtcggttcatgagcaatatcatgtttgatgcc
agagaggtgttgattcctggaagtgtgtatgacagaaaccgtgggtataacgagcctgtg
gttcgcacacatgatcagctgagttacattggtccagagagacagtacacaggccctgca
ttgaacatcccggtccctgtcaatatgttcatgccaccaatgccccagccattcaacgga
cagccaatgcctatgggtaatagaaatgccccagccaacagaggaagcggacgccgtcga
ggacagaggccaccgcgctacagtaacacccagtcccagcagaacagctcacagttcagt
cagggcaacagtcagagcttggctagtcaggatgtctcccagccattctcccagggaccg
ctcacccagggccccatgtccatgagccagccgttccagatgagtcagcctggattatct
ggactctcccagccagaactctctcaggacagtttcttggcagatgacttcaaatctcaa
gcagatggcatgctgtcccaagactccacttaccaaggagatcgcatgttctatgcatcg
cagttgtcacagggtccatttaattag
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integrated database retrieval system
