KEGG   Chlorella variabilis: CHLNCDRAFT_145220
Entry
CHLNCDRAFT_145220 CDS       T02924                                 
Name
(RefSeq) hypothetical protein
  KO
K14400  pre-mRNA cleavage complex 2 protein Pcf11
Organism
cvr  Chlorella variabilis
Pathway
cvr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cvr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    CHLNCDRAFT_145220
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cvr03021]
    CHLNCDRAFT_145220
   03019 Messenger RNA biogenesis [BR:cvr03019]
    CHLNCDRAFT_145220
Transcription machinery [BR:cvr03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     CHLNCDRAFT_145220
Messenger RNA biogenesis [BR:cvr03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     CHLNCDRAFT_145220
SSDB
Motif
Pfam: CID
Other DBs
NCBI-GeneID: 17355305
NCBI-ProteinID: XP_005847878
JGI: ChlNC64A_1_145220
UniProt: E1ZDY6
LinkDB
Position
Unknown
AA seq 556 aa
MAALQTQLVLAWAKALTELVTVEKKNIIALTEIARDALRSEPQSAPSLANLLTSRIVQAP
PSQKLPVLYLLDSISKLVGEPYKTLFSPALPEAYMSTWQHGGAGLHRPLDKLLGTWSGVF
PTPVLNDIYGRLAALRAAQAPLHVQQPAAAAAPNGYGGGGGGGFGYAPLVAAPTLGPPVQ
PMQPMAADPRLVQMQPPQQPGGGGYGQAAGPYQQQAGGAPYDAYPGPAPQPAYYQQQQQP
VYQQPPAAAPLQQQAGPQVSVPDLLSSLMDAGLLSAPGMQPGAAAQPLASGGSGLLATPP
YAAAVTATPPYAPAATATPEREQPASTRFTPERIKEPNPSAVSRLLRQTEATKSRFLDRK
FLRRQQKAGGAAARASRLWYVDLDTWMASTVGAVPGGGGASGAVGAGRVAQQVAAAPPEK
HSVPVDDAQTHCALSGEQFEQFWDEEHQEWRYRDARALGAEEAASYGLHEGAIVLVSALG
RPDASVLQPAPDAGVGGGVLAQLQAQQEIAADLAAAAAAGEHAGGGEGDVKPGLKHALEE
DSAEGEAPLEKRARLV
NT seq 1671 nt   +upstreamnt  +downstreamnt
atggcggcgctgcagacgcagctggtgctggcttgggccaaagccctcaccgagctcgtc
acggtggagaagaagaacatcatagcgctgacagagattgcgcgcgatgcgctacgctcc
gagccgcagtcggcgcccagcctggccaacctgctcaccagccgcatcgtgcaggcgccc
ccctcccagaagctgcctgtgctgtacttgctggactccatctccaagctggtgggggag
ccgtacaagacgctcttctcgcccgcgctgccagaggcctacatgagcacctggcagcac
ggcggcgcaggcctgcaccgccccctggacaagctgctgggcacctggtctggcgtgttc
cccacccccgtgctcaacgacatctacggccgcctggcggcgctcagggcggcgcaggcc
ccgctgcacgtgcagcagccggccgctgcggcggcgccaaacggctacggcggcggcggc
ggcggcggttttgggtacgcgcccttggtggcggcgcccacattggggccgcccgtgcag
ccgatgcagccgatggccgccgacccgcggctagtgcagatgcagccgccgcagcaaccg
ggagggggcggctacggacaggcagcggggccataccagcagcaggcggggggcgcgccg
tacgacgcctacccagggcccgccccgcagccagcgtactaccagcagcagcagcagcct
gtctaccagcagccgccggcagccgccccgctgcagcagcaggcggggccgcaggtcagc
gtgcctgacctgctgtcctcgctgatggatgccggcctgctgtcggcccctggcatgcag
ccaggcgccgcggcgcagccgctggcctctggcggcagcgggctgctggccacgccgccc
tacgcggcagccgtcacagccacgccgccatatgcacctgctgctacagccacgcccgag
cgcgagcagccagcctccactcgcttcaccccagaacggataaaggagcccaacccatcg
gcggtgtcccgcctgctgcgccagacagaagccaccaagtcgcgcttcctcgaccgcaag
ttcctgcgccgccagcagaaggctggtggagcagccgcccgcgcctcccgcctctggtac
gtcgacctcgacacctggatggcaagcaccgtgggcgcggtgcctggcggcggcggcgcg
tcgggggccgtgggagcggggcgcgtggcgcagcaggtggcagcagcgcctcccgagaag
cacagcgtgccggtggacgacgcacagacgcactgcgcgctgtcgggcgagcagtttgag
cagttttgggacgaggagcaccaggagtggcggtatcgcgacgccagggcgctgggcgcg
gaggaggcggccagctacgggctgcatgagggagccatcgtgctggtcagcgccctgggc
cggcctgatgccagcgttctgcagcctgccccagacgccggcgtcggcggcggcgtgctg
gcgcagctgcaggcgcagcaggagatcgcggcagacttggcggcggcggcggcggcgggg
gagcacgcgggtggcggcgagggggatgtgaagcctggcctgaagcatgcgctggaggag
gactctgcagagggggaggcgccactggagaagcgagccaggctggtctga

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