Chlorella variabilis: CHLNCDRAFT_145220
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Entry
CHLNCDRAFT_145220 CDS
T02924
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cvr
Chlorella variabilis
Pathway
cvr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CHLNCDRAFT_145220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvr03021
]
CHLNCDRAFT_145220
03019 Messenger RNA biogenesis [BR:
cvr03019
]
CHLNCDRAFT_145220
Transcription machinery [BR:
cvr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CHLNCDRAFT_145220
Messenger RNA biogenesis [BR:
cvr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
CHLNCDRAFT_145220
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Motif
Other DBs
NCBI-GeneID:
17355305
NCBI-ProteinID:
XP_005847878
JGI:
ChlNC64A_1_145220
UniProt:
E1ZDY6
LinkDB
All DBs
Position
Unknown
AA seq
556 aa
AA seq
DB search
MAALQTQLVLAWAKALTELVTVEKKNIIALTEIARDALRSEPQSAPSLANLLTSRIVQAP
PSQKLPVLYLLDSISKLVGEPYKTLFSPALPEAYMSTWQHGGAGLHRPLDKLLGTWSGVF
PTPVLNDIYGRLAALRAAQAPLHVQQPAAAAAPNGYGGGGGGGFGYAPLVAAPTLGPPVQ
PMQPMAADPRLVQMQPPQQPGGGGYGQAAGPYQQQAGGAPYDAYPGPAPQPAYYQQQQQP
VYQQPPAAAPLQQQAGPQVSVPDLLSSLMDAGLLSAPGMQPGAAAQPLASGGSGLLATPP
YAAAVTATPPYAPAATATPEREQPASTRFTPERIKEPNPSAVSRLLRQTEATKSRFLDRK
FLRRQQKAGGAAARASRLWYVDLDTWMASTVGAVPGGGGASGAVGAGRVAQQVAAAPPEK
HSVPVDDAQTHCALSGEQFEQFWDEEHQEWRYRDARALGAEEAASYGLHEGAIVLVSALG
RPDASVLQPAPDAGVGGGVLAQLQAQQEIAADLAAAAAAGEHAGGGEGDVKPGLKHALEE
DSAEGEAPLEKRARLV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctgcagacgcagctggtgctggcttgggccaaagccctcaccgagctcgtc
acggtggagaagaagaacatcatagcgctgacagagattgcgcgcgatgcgctacgctcc
gagccgcagtcggcgcccagcctggccaacctgctcaccagccgcatcgtgcaggcgccc
ccctcccagaagctgcctgtgctgtacttgctggactccatctccaagctggtgggggag
ccgtacaagacgctcttctcgcccgcgctgccagaggcctacatgagcacctggcagcac
ggcggcgcaggcctgcaccgccccctggacaagctgctgggcacctggtctggcgtgttc
cccacccccgtgctcaacgacatctacggccgcctggcggcgctcagggcggcgcaggcc
ccgctgcacgtgcagcagccggccgctgcggcggcgccaaacggctacggcggcggcggc
ggcggcggttttgggtacgcgcccttggtggcggcgcccacattggggccgcccgtgcag
ccgatgcagccgatggccgccgacccgcggctagtgcagatgcagccgccgcagcaaccg
ggagggggcggctacggacaggcagcggggccataccagcagcaggcggggggcgcgccg
tacgacgcctacccagggcccgccccgcagccagcgtactaccagcagcagcagcagcct
gtctaccagcagccgccggcagccgccccgctgcagcagcaggcggggccgcaggtcagc
gtgcctgacctgctgtcctcgctgatggatgccggcctgctgtcggcccctggcatgcag
ccaggcgccgcggcgcagccgctggcctctggcggcagcgggctgctggccacgccgccc
tacgcggcagccgtcacagccacgccgccatatgcacctgctgctacagccacgcccgag
cgcgagcagccagcctccactcgcttcaccccagaacggataaaggagcccaacccatcg
gcggtgtcccgcctgctgcgccagacagaagccaccaagtcgcgcttcctcgaccgcaag
ttcctgcgccgccagcagaaggctggtggagcagccgcccgcgcctcccgcctctggtac
gtcgacctcgacacctggatggcaagcaccgtgggcgcggtgcctggcggcggcggcgcg
tcgggggccgtgggagcggggcgcgtggcgcagcaggtggcagcagcgcctcccgagaag
cacagcgtgccggtggacgacgcacagacgcactgcgcgctgtcgggcgagcagtttgag
cagttttgggacgaggagcaccaggagtggcggtatcgcgacgccagggcgctgggcgcg
gaggaggcggccagctacgggctgcatgagggagccatcgtgctggtcagcgccctgggc
cggcctgatgccagcgttctgcagcctgccccagacgccggcgtcggcggcggcgtgctg
gcgcagctgcaggcgcagcaggagatcgcggcagacttggcggcggcggcggcggcgggg
gagcacgcgggtggcggcgagggggatgtgaagcctggcctgaagcatgcgctggaggag
gactctgcagagggggaggcgccactggagaagcgagccaggctggtctga
DBGET
integrated database retrieval system