Crocosphaera watsonii: CwatDRAFT_4970
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Entry
CwatDRAFT_4970 CDS
T05097
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cwa
Crocosphaera watsonii
Pathway
cwa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cwa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CwatDRAFT_4970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cwa03400
]
CwatDRAFT_4970
Enzymes [BR:
cwa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CwatDRAFT_4970
DNA repair and recombination proteins [BR:
cwa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CwatDRAFT_4970
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
EAM51890
UniProt:
Q4C6S8
LinkDB
All DBs
Position
195512..198994
AA seq
1160 aa
AA seq
DB search
MVFSSLIRTLQKSPLTKELLGKLKENNELGLKGINRLPKGLVSSALAQSKEDNLLVICAT
LEEAGRWTAQLEIMGWQTVNFYPTSEASPYEPLNPESEMVWGQMQVLSNLNRLKDNNNNY
AIVTTEKALQPHLIPPDIFHDYCLNIQEEMTEKSKEFDGKLVRLGYERVNLVEVEGQWSR
RGDIVDIFPVSSEIPIRLEWFGDELEKIREFDPSTQRSLDKLEQILLTPIGFNTIIANKI
KENNYNLDDYLSEQEKEGIDNYNYPPGMQRFLGIAFEEPSSILDYLEPNTLCVFDEIEQC
RSHSDRWLDYIEEQWENNEKSLPKVHRSFDDSFQLAEKLPKLYLYELSEVNNKNALDLSS
RPLPTTPHQFAKLAEILRGKREIYSGMSLNKYATWLISAQPSRTVSLLQEHDCQAQFIPN
PRDYPAINKSHIQDTAIALKYSGLAELEGFILPTFRIVVVTDKEFFGQHVLATAGYIRKR
RRATSKKVDLQQLHQGDYVVHKSHGIGKFLKLESLATREYLVVQYEDGILRIPADSFDSV
SRYRHTESKPPKLHKMTGKTWQKSKQKVRKNIRKLAVDLINLYAKRAKNIGFTYPLDTPW
QQELEDSFPYQPTPDQLKAIQEVKIDLESDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSG
HKQVVFLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTASEKKEIIQRLSTGELDIVV
GTQQLLGKSVKFNDLGLLVIDEEQRFGVNQKEKIKDMKSHIDVLTLSATPIPRTLYMSLS
GIREMSLITTPPPSRRPIKTHLSRYNPDAVRNAIRNELDRGGQVFYVVPRVEGIEEVAAQ
IKRMVPSARMAIGHGQMDVNELEMTMLGFNNGDADILVCTTIVESGLDIPRVNTIIVEDA
QKFGLAQLYQLRGRVGRAGIQAHAWLLYPSKSELTETARKRLRALQEFSQLGSGYQLATR
DMEIRGVGNLLGAEQSGQMESIGFELYMEMLQESIREIQGQEIPKVEDTQVDLQLTAFIP
TDYIPDMEQKMSAYRAIAVANSQKELSQIAAEWSDRYGKLPVPVQQLLQVIELKQLAKSL
GFSRIKPEGKQHIVLETPMEEPAWKLLQEKIPEHLRSRFVYSPKKVTVRGLGVMKPQKQL
ESLLEWLEKMQDAIKVDSEK
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggttttttcttctctgattcgtaccctacaaaaatctcctttaaccaaagaattattg
ggcaaacttaaggaaaataatgaattaggattaaaaggaattaatcgactgccaaaaggg
ttagtttcttctgctttagctcagtctaaagaagacaacctattggttatttgtgctact
ttagaagaagcaggaagatggacagcacaactagaaataatgggatggcaaaccgtcaat
ttttatccaacatctgaagcatctccctacgaacctttgaaccctgaatcagaaatggtc
tggggacaaatgcaggtattatcaaatctgaatagattaaaagataataacaataattat
gctattgttaccactgaaaaagctctacagcctcatttaatacctcctgatatttttcat
gactattgtttaaatatacaggaagaaatgacagaaaaatcaaaagaatttgacggaaaa
ttagttagattaggatatgaaagggttaatttagtagaagtagaaggtcaatggagtcgt
cggggtgacattgttgatattttcccagtttcttcagagattcctatcagactagaatgg
tttggagatgaattagaaaaaattagagaattcgatccatcaactcagcgatcgctggat
aaattagagcaaattttgttaacacctattggttttaatacaatcattgctaacaaaatc
aaagagaataactataatttagatgattatttatcagaacaggaaaaagaagggatagat
aattacaattatcctccaggaatgcagcgatttttaggaatagctttcgaggaacctagc
tctattttagactatttagaacctaatactctctgcgttttcgatgaaattgaacaatgt
cgctcccatagtgatcgctggttagactatatagaagaacaatgggaaaataatgaaaaa
tcattacccaaggttcatcgaagttttgatgactcttttcagttggcagaaaaattacct
aaactatatttatacgaactatcagaagttaataataaaaacgccttagatttatcaagt
cgccctctaccaacaactccccatcaatttgctaaacttgcagaaatattaagaggaaaa
cgagaaatttatagtggtatgagtctaaataaatatgccacttggttaatttcagcgcaa
ccctctcggacggtttctctattgcaagaacacgattgtcaagcacaatttattcctaat
cctcgtgactatccagctattaataagtctcatattcaagatacagcgatcgccttaaaa
tattcaggtttagcagaattagaaggattcattttacccacatttcgtattgttgtagtc
acggataaagaattttttggacagcacgttttagctacagcagggtatattaggaagcgt
cgtcgtgctacttccaaaaaagttgacttacaacaactacaccaaggggattatgtagtg
cataaaagtcatggcataggtaaatttttgaagttagaaagtttagctacccgtgaatat
ttggtagtacaatatgaagacggaattttgagaattcccgcggattctttcgatagtgta
tcccgttatcgccatactgaatccaaacctcccaaactccataaaatgacaggtaaaacc
tggcaaaaatctaaacaaaaagtacgtaaaaatattaggaaattagcggttgatctgata
aatttatatgcaaaaagagctaaaaatatagggtttacctatccccttgatactccctgg
caacaggaattagaagactccttcccttatcaacccaccccagatcaactaaaagcgata
caagaagtgaaaatagacttagaaagcgatcgccctatggatagattagtgtgtggtgat
gtaggttttggcaagacagaagttgctgtgagagcaatttttaaagccgttacaagtggt
cataaacaagtagtatttttagctcccactaccattttaacccaacaacactatcatact
ctaaaagaaagatttgccccctatcctatcaatattggactattaaatagatttcgcact
gcctcagagaaaaaagagattattcaacgcttatccacaggagaattagatattgttgtt
ggcactcagcaactattaggaaaaagtgtcaaatttaatgacttaggcttattagttata
gacgaagaacaaagatttggagttaatcagaaagagaaaataaaagatatgaaaagtcat
attgatgttcttactttaagcgcaacaccgattcccagaacattatatatgtccttatca
ggaatacgggaaatgagcttgattactacgcctccgccctctcgtcgccccattaaaacc
catttatctcgctataatcctgatgctgtgagaaacgctattcgtaatgaattagacaga
ggaggacaagttttttatgtagttcctagagtggaaggaattgaagaagtagcagcccaa
ataaagagaatggttcccagtgcgagaatggccataggccatggtcaaatggatgttaat
gagttagaaatgaccatgttggggtttaacaatggggatgcagatattctggtttgtact
accattgttgagtcaggtttagatattcctcgggttaatacaatcattgtagaagacgct
caaaaatttggtttagcacaactatatcaacttagaggaagagtaggcagagccggaatt
caagcacacgcttggttactctatcccagtaaatcagaactaacagaaacggcacgaaaa
agactaagagctttacaagaatttagtcaactaggctcggggtatcaattagcaactcgt
gacatggaaattcgtggagttggtaacttattgggtgccgaacaatcaggacaaatggag
tctattggctttgaattatatatggaaatgttacaagaatctatccgagaaattcaaggt
caagaaattcccaaagtagaagatactcaagttgacttacaattaactgcttttattcct
acggattatattcccgatatggaacaaaaaatgtctgcttatcgtgcgatcgctgtggct
aattctcagaaagaattaagccaaattgcagcagaatggagcgatcgctacggaaaatta
ccagttcccgtacaacaattattacaagttattgaactcaaacaattagcaaaatctttg
ggattttctcgcattaaaccagaaggaaaacaacatatagtcttagaaacaccaatggaa
gaaccagcttggaaattattacaagaaaaaatccccgaacatctgcgatcgcgctttgtt
tatagtcccaaaaaagttactgtcaggggattaggagtaatgaaacctcaaaaacaacta
gaaagtttattagaatggttagaaaagatgcaagacgcaatcaaagttgatagcgaaaaa
tga
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