Cellulomonas wangleii: KG103_04750
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Entry
KG103_04750 CDS
T08575
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cwan
Cellulomonas wangleii
Pathway
cwan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cwan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KG103_04750 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cwan03400
]
KG103_04750 (mfd)
Enzymes [BR:
cwan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KG103_04750 (mfd)
DNA repair and recombination proteins [BR:
cwan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KG103_04750 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QVI63213
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All DBs
Position
1004112..1007756
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AA seq
1214 aa
AA seq
DB search
MDLTGLLPALLGDPAAAEAVASVRARGELDVVGPAGIRPPLLAALAGAHPTAGAGTQGAA
GRPLVVVTATGRDADELAGALRCYLPDDDVAVLPSWETLPHERLSPRSDTVARRLAVFRR
LAHPDPEPGPSGPVRVLVMPVRALLQPVVEGLGELVPVEVHTGDTVDLDDLAQRLVDAAY
TRVDMVERRGEFAVRGGILDVFPPTEDHPLRIELWGEDVEEIRWFSVADQRSLEVADHGL
WAPPCREILLTDAVRARAASLREQLPGALDMLDRLAEGIAVEGMESLAPVLVDRMVPVLD
LVPEESLLVVVDPERVRRRAHDLVATTREFLEAAWTSAAAGAATPLDLSAASFASFAEVR
GLAAVRALGWWTLSGFTLDADAVTGDGGASDGPGAEGDVRTLVVGAREVERYRGDVARAV
DDVRRLQHDGWRLVLATDGHGPAQRMVEQLRAADVPARLVATVPDEPEGGVVLVTPAPVG
PGFVHEGLHLAVFSEADLTGRAGSSTRDMRRMPSRRRNVVDPLQLRPGDFVVHEQHGVGR
FVELVQRTIGSGASAATREYLVVEYASSKRGQPGDRLYVPTDQLDQVTKYVGGESPTLNR
MGGSDWQKTKGRARKAVKEIAAELIRLYSARMATPGHAFGPDTPWQRELEDAFAYVETPD
QLATIDEVKADMEKTVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQ
HLDTFTERYAPYPVNVKALSRFQSAKESTEVIDGLADGSVDVVIGTHRLITGSVRFKDLG
LVIIDEEQRFGVEHKETLKALRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERH
PVLTFVGPYEEKQISAAIRRELLREGQVFFVHNKVESIERVASRLNELVPEARIAVAHGK
MGEHRLEQVIVDFWEKKFDVLVCTTIVETGLDISNANTLILERADRLGLSQLHQLRGRVG
RGRERAYAYFLYPPEVPLTETAHDRLQTIAAHTDLGAGMAVAMKDLEIRGAGNLLGGEQS
GHIEGVGFDLYVRMVGEAVASFKGEAAEELPDVTIELPVDAHVPHDYIAHERLRLEAYRK
IAAATDEATLREVHAELVDRYGPVPAAVDNLFEVAQFRLHVRAAGIADVTAQGRFVRFAP
VELPESAQLRLKRLYPGSVLKPAVRTVLVPFPTTARIGGKPLHGREVLTWARQFIDAVVR
GDVSAAAAAGTAAR
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atggatctcaccggcctcctgcccgctctcctcggcgaccccgccgccgccgaggcggtc
gcctccgtgcgcgcgcgcggtgagctcgacgtcgtcgggcccgccggcatccggcccccg
ctgctcgcggcgctggccggtgcccacccgaccgcgggtgccggcacgcagggcgccgcg
ggccggccgctcgtcgtggtcaccgccacgggtcgcgacgcggacgagctggcgggcgcg
ctgcgctgctacctccccgacgacgacgtcgccgtcctcccgagctgggagacgctgccg
cacgagcggctgagcccccggtcggacacggtggcgcgccgcctcgcggtgttccgccgc
ctggcgcacccggaccccgagcccgggccgtccggtcccgtgcgggtgctggtcatgccg
gtgcgggcgctgctgcagccggtggtcgaggggctgggcgagctggttccggtcgaggtg
cacacgggtgacacggtcgacctcgacgacctcgcccagcggctcgtcgacgccgcgtac
acgcgcgtggacatggtcgagcgacgcggggagttcgccgtgcgcggcggcatcctcgac
gtgttcccgcccaccgaggaccatccgctgcgcatcgagctgtggggcgaggacgtcgag
gagatccgctggttctccgtggccgaccagcgcagcctcgaggtggccgaccacggcctg
tgggccccgccgtgccgggagatcctgctgacggacgcggtccgcgcccgtgccgcgtcg
ctgcgcgagcagctgcccggggcgctggacatgctcgacaggctggccgaggggatcgcc
gtcgagggcatggagtccctcgccccggtgctggtcgaccggatggtgcccgtgctcgac
ctggtgcccgaggagtcgctgctggtcgtcgtcgaccccgagcgcgtgcgtcgccgggcg
cacgacctggtggccacgacccgggagttcctcgaggccgcgtggacgtcggccgcggcg
ggtgcggccacgccgctggacctgtcggcggcgtccttcgcgtcgttcgccgaggtgcgc
gggctggccgcggtgcgcgcgctgggctggtggacgctgtcgggcttcacgctcgacgcg
gacgcggtgaccggcgacggcggggcgtcggacgggccgggcgcggagggcgacgtccgc
accctcgtcgtcggggcgcgcgaggtcgagcggtaccgcggtgacgtcgcgcgggccgtc
gacgacgtccgccgcctgcagcacgacgggtggcggctggtgctcgcgaccgacggccac
ggcccggcgcagcgcatggtcgagcagctccgggcggccgacgtcccggcacgcctggtc
gccaccgtcccggacgagcccgagggcggggtcgtgctggtcacgcccgcgccggtcggc
cccgggttcgtgcacgagggcctgcacctcgcggtgttcagcgaggccgacctcacgggg
cgggccgggtcgagcacccgcgacatgcgccgcatgccgagccggcggcgcaacgtcgtc
gacccgctgcagctgcgccccggcgacttcgtggtgcacgagcagcacggtgtcgggcgg
ttcgtcgagctggtgcagcgcacgatcggctcgggcgcgtcggcggcgacccgcgagtac
ctggtggtcgagtacgcgtcgagcaagcgcggccagccgggggaccggctgtacgtgccc
accgaccagctggaccaggtcacgaagtacgtcggcggcgagtccccgacgctcaaccgc
atgggcggctcggactggcagaagaccaagggccgcgcgcgcaaggccgtcaaggagatc
gcggccgagctgatccggctgtactcggcgcgcatggcgacgccgggccacgcgttcggc
cccgacacgccctggcagcgcgagctcgaggacgcgttcgcgtacgtcgagacgccggac
cagctggccacgatcgacgaggtcaaggccgacatggagaagacggtccccatggaccgc
ctggtctgcggcgacgtcggctacggcaagacggagatcgcggtgcgcgcggcgttcaag
gccgtgcaggacggcaagcaggtcgccgtgctggtgccgacgacgctgctggtgcagcag
cacctcgacacgttcaccgagcggtacgcgccgtacccggtgaacgtgaaggcgctgtcc
cggttccagagcgccaaggagtcgaccgaggtcatcgacgggctggcggacgggtccgtc
gacgtcgtcatcggcacgcaccggctcatcaccggcagcgtgcggttcaaggacctgggg
ctcgtcatcatcgacgaggagcagcgcttcggcgtcgagcacaaggagacgctcaaggcg
ctgcgcaccaacgtcgacgtgctcgcgatgagcgcgacgccgatcccgcgcacgctcgag
atggccgtcacgggcatccgcgagatgtcgacgctggccacgccgccggaggagcgccac
ccggtgctgacgttcgtcgggccgtacgaggagaagcagatctcggccgcgatccggcgt
gagctgctgcgcgagggtcaggtcttcttcgtgcacaacaaggtcgagtcgatcgagcgt
gtggcgtcgcggctcaacgagctcgtgcccgaggcccgcatcgcggtcgcccacggcaag
atgggtgagcaccggctcgagcaggtcatcgtcgacttctgggagaagaagttcgacgtg
ctggtctgcacgacgatcgtcgagaccggcctggacatctcgaacgcgaacaccctcatc
ctcgagcgggccgaccggctcgggctctcgcagctgcaccagctgcgcgggcgcgtgggc
cgcgggcgcgagcgggcgtacgcgtacttcctgtacccgccggaggtgccgctcaccgag
accgcgcacgaccgcctgcagaccatcgccgcgcacaccgacctcggcgccggcatggcc
gtggccatgaaggacctcgagatccgcggtgcgggcaacctgctgggcggggagcagtcc
gggcacatcgagggcgtcgggttcgacctgtacgtgcgcatggtgggcgaggcggtcgcg
tcgttcaagggtgaggcggccgaggagctgcccgacgtcacgatcgagctgcccgtcgac
gcgcacgtgccgcacgactacatcgcccacgagcggctgcgtctggaggcgtaccgcaag
atcgccgcagcgaccgacgaggcgacgctgcgcgaggtgcacgccgagctcgtcgaccgg
tacgggccggtgcccgccgccgtcgacaacctcttcgaggtcgcgcagttccggctgcac
gtgcgggccgccggcatcgcggacgtcaccgcgcagggccggttcgtgcggttcgcgccg
gtcgagctgccggagtccgcgcagctgcggctcaagcggctgtacccggggtcggtgctc
aagccggcggtgcgcacggtgctcgtgccgttcccgaccaccgcgcgcatcggcggcaag
ccgctgcacgggcgcgaggtgctcacgtgggcgcggcagttcatcgacgcggtggtccgc
ggggacgtctcggccgcggcggccgcgggcacggcggcgcgctga
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