Conexibacter woesei: Cwoe_5241
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Entry
Cwoe_5241 CDS
T01153
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cwo
Conexibacter woesei
Pathway
cwo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cwo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cwoe_5241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cwo03400
]
Cwoe_5241
Enzymes [BR:
cwo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cwoe_5241
DNA repair and recombination proteins [BR:
cwo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Cwoe_5241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
AAA_22
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ADB53647
UniProt:
D3FEF5
LinkDB
All DBs
Position
complement(5602228..5605566)
Genome browser
AA seq
1112 aa
AA seq
DB search
MLAPLLAYAADDPATTTLARDGGRAFVSQSLRPFVVAALAQQDPARPLLVVAGDDRQARD
LAADMRTWLQPRPVRFYPSRGVAYESHLAPPAHLVGLRVAALDALIGERGAAAPVVVVSA
VALSEKVPNPALRPHGFTLRVGELMDLDESAEDLVAAGYERVDQVEDRGQFAIRGGLLDL
YPATEDRAVRVDLFGDEIESLRWFSTFTQRSLGDAEEVEVSPAAELAPEHRELAEIAALE
DADNRPDIAELLPVGDFHAMLDLVPDAAVMIAAEEEIAPALRDHWQDVCTAFHDTDAHDL
YVAPEAVQAALGERARIHLSSIDGGQPLAFRGQAADVAARGVKEAEPELEKLVRSGYRTV
VAFGRRGEGDRAAYNLGRMKVRWVDGDAPRGADLAFVEARLRDGFIAPGFRLAVIPEHRL
FHRRPARTAGTGTGRRRGALRSFTDLRTGDIVVHEDHGLARFAGFDTKTVAGVTRDYLNL
EYAGSDKVFMPVDQFAKISRYVGAGGDHPPLSKLGGRRWDTLKARARRAAQEMAGELLNL
YAERKRRAGHAFPPDSDWMREFEDAWPYRETPDQREAIEQVKTDMETARPMDRLICGDVG
YGKTEVALRAAFKAANDGRQVMVLVPTTILAQQHYGTFAERLKDYPFTIEHVSRFRPAAE
QRAAIRAFTEGSVDILIGTHRLLSRDVRPRDLGLLIVDEEQRFGVKQKELLRQLKLKVDV
IAMSATPIPRTLQMSIAGIRDISVIETPPEGRRPVKTYVGEYDEQLVKSAIERERSRGGQ
AFFLHNRVETIDETAERLRALCPEARFEVAHGQLDEKTLEERMLRFLRGEADVLVATSII
ESGIDIPQANTLMVERADLFGLSQLYQIRGRVGRSRERAYAYLLYPSASALTADAAQRLS
ALSDYTELGAGFKVAMRDLEIRGAGNLLGDEQSGHVAALGFELYMQMLDEAVQEMGGEDG
TEELAEPVRLDVNVDAYVPVDYIPYEQAKIDVHRRIAGAREVSELHELRSELADRFGEPP
EPLRNLLLLQQARIKLGEAGARAVSFRGGRLAVTPIELDSRRAKRMREEIPEALYESGKS
QLSVRVPDDPAARFPAVVRAADVLLAVTREAA
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgctcgctccgctcctcgcatacgctgctgacgaccctgccacgacgacgctcgcgcgc
gacggcggccgggcgttcgtgtcgcagtcgctgcgtccgttcgtcgtcgcggcgctggcg
cagcaggatccggcgcgcccgctgctcgtcgtagccggcgacgaccgccaggcgcgcgac
cttgccgcagacatgcgcacctggctgcagccgcggccggtccgcttctacccctcgcgc
ggcgtcgcctacgagtcgcacctcgcgccgcccgcgcatctcgtcggcctgcgcgtcgcg
gcgctcgacgcgctgatcggcgagcgcggcgcggccgccccggtcgtcgtcgtctccgcc
gtcgcgttgtccgagaaggtcccgaacccggcgctgcgcccgcacggcttcacgctcaga
gtcggcgagctgatggacctcgacgagtcggccgaggacctcgtcgcggcaggctacgag
cgcgtcgaccaggtcgaggaccgcggccagttcgcgatccgcggcgggctgctcgacctc
tacccggcgaccgaggaccgcgccgtgcgcgtcgacctgttcggggacgagatcgagtcg
ctgcggtggttctcgacgttcacgcagcgctcgctcggcgacgcggaggaggtcgaggtg
tcgcccgccgccgagctggcccccgagcaccgcgagctggccgagatcgccgcgctggag
gacgccgacaaccggcccgacatcgcggagctgctgcccgtcggcgacttccacgcgatg
ctcgacctcgtccccgacgcggctgtgatgatcgccgccgaggaggagatcgcgccggcg
ctcagggaccactggcaggacgtctgcaccgccttccacgacaccgacgcgcacgacctc
tacgtcgcgccggaggctgtccaggcggcgctcggcgagcgcgcgagaatccacctctcc
tcgatcgacggcgggcagccgctcgcgttccgcgggcaggcggcggacgtcgccgcgcgc
ggcgtgaaggaggccgagccggagttggagaagctggtgcgctccggctaccgcaccgtc
gtcgcgttcggccgcagaggcgagggcgaccgcgcggcctacaacctcggccgcatgaag
gtccgctgggtcgacggcgacgcgccgcgcggcgccgacctcgcgttcgtcgaggcgcgc
ctgcgcgacggcttcatcgcgcccggcttcagactcgcggtgatccccgagcaccggctg
ttccaccgccgcccggcgcggacggcggggaccggcaccggccgtcgccgcggcgcgctg
cgctcgttcacggacctgcgcaccggcgacatcgtcgtccacgaggaccacggcctcgcg
cgcttcgccggcttcgacacgaagacggtcgccggcgtcacgcgcgactacctgaacctg
gagtacgccggcagcgacaaggtcttcatgccggtcgaccagttcgccaagatctcgcgc
tacgtcggcgccggcggcgaccacccgccgctctccaagctcggcggcagacgctgggac
acgctcaaggcgcgcgcccgcagagcggcgcaggagatggccggcgagctgctcaacctc
tacgccgagcgcaagcgccgcgccggtcacgcgttcccgcccgacagcgactggatgcgc
gagttcgaggacgcctggccgtaccgcgagacgcccgaccagcgcgaggctatcgagcag
gtcaagaccgacatggagaccgcgcgcccgatggaccgcctgatctgcggcgacgtcggc
tacggcaagacagaggtcgcgctgcgggccgccttcaaggccgccaacgacggcagacag
gtgatggtgctcgtcccgacgacgatcctcgcccagcagcactacggcaccttcgccgag
cggctgaaggactaccccttcacgatcgagcacgtctctcgcttccggccggcggcggag
cagagagcggcgatcagagcgttcacggagggctccgtcgacatactgatcggcacccac
cgcctgctctcgcgtgacgtccgcccgagggacctcgggctgctgatcgtcgacgaggag
cagcgcttcggcgtcaagcagaaggagctgctgcgccagctgaagctgaaggtcgacgtg
atcgcgatgtcggcgacgccgatcccgcgcacgctgcagatgtcgatcgccggcatccgc
gacatctccgtgatcgagacgccgccagagggccgccggccggtcaagacctacgtcggc
gagtacgacgagcagctggtcaagtcggcgatcgagcgcgagcgctcgcgcggcggacag
gcgttcttcctccacaaccgcgtcgagacgatcgacgagacggccgagcggctgcgggcg
ctgtgcccggaggcgcgcttcgaggtcgcccacggccagctcgacgagaagacgctggag
gagcggatgctgcgcttcctgcgcggcgaggccgacgtgctcgtcgcgacctcgatcatc
gagtccggcatcgacatcccgcaggcgaacacgctgatggtcgagcgcgcggacctcttc
ggcctctcccagctctaccagatccgcgggcgcgtcggtcgcagccgcgagcgcgcctac
gcgtatctgctgtacccgtccgcctcggcgctgaccgccgacgccgcgcagcggctctcg
gcgctgtcggactacaccgagctcggcgccggcttcaaggtcgcgatgcgcgacctcgag
atccgcggcgcgggcaacctgctcggcgacgagcagtcgggccacgtcgccgcgctcggc
ttcgagctgtacatgcagatgctcgacgaggccgtccaggagatgggcggcgaggacggc
accgaggagctggccgagccggttcggctcgacgtcaacgtcgacgcgtacgtgccggtc
gactacatcccgtacgagcaggcgaagatcgacgtccaccgccgcatcgccggcgcgcgc
gaggtctccgagctgcatgagctgcgctccgagctggccgatcgattcggcgagccgccc
gagccgctgcgcaacctgctgctgctgcagcaggcgcgcatcaagctcggcgaggctggg
gcgcgcgcggtgagcttccgaggcggtaggctcgccgtgacgccgatcgagctcgactcg
cgccgtgccaagcggatgcgcgaggagatcccggaggcgttgtacgagtcgggcaagtcg
cagctgtccgtgcgggtgcccgacgatccggccgcccgcttcccggcggtggtccgggcg
gccgacgtgctgctggccgtgacccgcgaagcggcgtga
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integrated database retrieval system
