Corynebacterium xerosis: FOB82_02100
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Entry
FOB82_02100 CDS
T06491
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cxe
Corynebacterium xerosis
Pathway
cxe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cxe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FOB82_02100 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cxe03400
]
FOB82_02100 (mfd)
Enzymes [BR:
cxe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FOB82_02100 (mfd)
DNA repair and recombination proteins [BR:
cxe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FOB82_02100 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
Col-Pyo_DNase
Motif
Other DBs
NCBI-ProteinID:
QGS33914
UniProt:
A0A6B8TEG1
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All DBs
Position
complement(479389..483006)
Genome browser
AA seq
1205 aa
AA seq
DB search
MTGAKTGAMVAPLSGLAQAVAGEPQLRGVVKHLGEPELHMTGNDRVRPHLIAALAAKAPV
LAVTATGREAEDLTAELRSMLGAKVAVFPSWETLPHERLSPAVDTVATRRAVLSGMRTGT
VTVVVAAVRSLVQPVLDDGAEPIRLAVDEEVPDLPERLERHGYSRVDMVGRRGQFAVRGG
IVDVFPATADNPVRVELWGDEVTEMRVFSVGDQRTISEVEAGDAAGVVEVHACRALLLDD
AVKARAGEMAGERSGDVQEMLVRISDGQWVDGMEALIPLLTDRPLVPLTELLPDGAHTLL
CGPERIRSRAADLIATGDEFMAAAWETAAMGGGAPIPADGLDASAYRHLDEVRRAPWWSI
SPPGMLDGGVTEDDVLPLTYEPGPEPRGDLKAIGAMMAQLREATVGGERVAYVAGTPAGV
RRQAEKFREAGIACRIATGPEYPEPGRITVYQGVSHGGLVFPRTEGGALTVIAEADVTGN
RVTDIGGGRRKPAKRRNRVDPLALEAGDFVVHDTHGIGRFVKLTERTIGTGDDQARREYV
VLEYASGKRGGPPDQLYVPMESLDQLTRYVGGEKPTLSKMGGSDWKTTKRKARGAVREIA
EELVKLYAERQAAPGHAFAPDSPWQTEMEDNFPFAETEDQLTAIAEIKADMEKPAPMDRV
LIGDVGYGKTEVALRAAFKAVQDGKQVAVLVPTTLLAQQHLATFSERMEGFPVTVRGLSR
FTSTRESKEILTGLKEGTVDIVIGTHRLLQTGVSWKQLGLVIVDEEQRFGVEHKEHIKAL
RNHVDVLTMSATPIPRTLEMSMAGIREMSQILTPPEDRHPVLTYVGAQSDKQIAAAIRRE
LLRDGQVFYLHNKVSTIDKAAQKVRDLVPEARVVVAHGQMGEEMLERTVQGFWDREFDVL
VCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERAYAYFLYPADQTLTEN
SYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHISGVGFDMYVRLVGEAVAA
MKAVADGETPDASAQEPKEIRIDLPVDANIPAGYVDSERLRLEAYRKFASAQAMEDIDVV
LDELVDRYGEPPIEVQRLAAISRLRIICREFGVHEVQATGAHIKIGPMELADSKQVRLKR
LHPQSTYRAASRTVSVAVPKEGKGLRAKPVRDVALVQWVADFLTGMAGIPVMDIVGGAHG
GKDQK
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgaccggggcgaagacgggggcgatggtggccccgctgtcggggctggcgcaggcggtg
gcgggggagccgcagctgcggggcgtcgtgaagcatctcggcgagcccgaactgcacatg
accggcaacgatcgggtgcggccgcatctcatcgcggcgctggccgccaaggcccccgtg
ctggcggtgaccgccaccggccgcgaggccgaggatctcaccgcggagctgcggtcgatg
ctgggcgcgaaggtggccgtgttcccgtcgtgggagacgctgccgcacgagcggctgtcg
ccggcggtggacaccgtggccacgcgccgggcggtgctgtccggcatgcgcacgggcacg
gtgaccgtcgtcgtcgccgcggtgcggtcgctggtgcagccggtgctcgacgacggcgcg
gagcccatccgcctcgccgtcgacgaagaggtgccggacctgccggagaggctggagcgc
cacggttactcgcgcgtcgacatggtcggccggcgcgggcagttcgccgtgcgcggcggc
atcgtcgacgttttccccgccaccgccgacaaccccgtgcgcgtggagctgtggggcgac
gaggtcacggagatgcgcgtgttctccgtcggcgaccagcgcaccatctccgaagtcgag
gccggcgatgccgccggcgtggtggaggtccacgcctgccgggcactgctcctcgacgac
gccgttaaggcgcgcgccggcgagatggccggcgaacgctccggcgacgtgcaggaaatg
ctcgtgcgcatctccgacggccagtgggtcgacggcatggaggcgctgatcccgctgctg
accgaccgcccgctggtaccgctgacggagctgctgcccgacggcgcgcacactctcctg
tgcggcccggagcgcatccgttcccgcgccgcggacctcatcgccaccggcgacgagttc
atggccgcggcgtgggaaaccgccgcgatgggcggcggcgcgccgatcccggcggacggg
ctcgacgccagcgcctaccggcacctcgacgaagtccggcgcgccccgtggtggtcgatt
tccccgcccggcatgctcgacggcggcgtcaccgaagacgacgtcctgcccctgacctac
gaacccggccccgaaccccgcggcgacctcaaggccatcggggccatgatggcgcagctg
cgcgaggccaccgtcggcggcgaacgcgtcgcctacgtcgccggaacgccggccggcgtc
cgtcgccaagcggagaagttccgcgaagccggcatcgcctgccgcatcgccaccggcccc
gaataccccgaacccgggcgcatcaccgtctaccagggcgtcagccacggcggcctggtg
ttcccgcgcaccgaaggcggggcgctgacggtcatcgccgaagccgacgtcaccggcaat
cgtgtcacagacatcggcggcgggcgccgcaagcccgccaagcgccgcaaccgcgttgac
ccgctcgccctggaagccggcgacttcgtggtgcacgacacccacggcatcggccggttc
gtcaaactcaccgaacgcaccatcggcaccggcgacgaccaggcgcgccgtgaatacgtg
gtgctggagtacgcctccggcaagcgcggaggcccgcccgaccagctctacgtgcccatg
gagagcctcgaccagctgacccgctacgtcggcggcgaaaagcccaccctgtcgaagatg
ggcggctccgactggaagaccaccaagcgcaaggcccgcggcgccgtccgcgaaatcgcc
gaagagctggtcaagctctacgccgagcggcaggccgcgccgggccacgccttcgcgccg
gattcgccgtggcagaccgagatggaggacaacttccccttcgccgaaacggaggaccag
ctcaccgccatcgccgagatcaaggcggacatggaaaagcccgcgccgatggaccgcgtg
ctcatcggcgacgtcggctacggcaagaccgaagtcgcgctgcgcgcggcgttcaaggcg
gtgcaggacggcaagcaggtagcggtgctcgtgcccacgaccctgctggcccagcagcac
ctggccacgttcagcgagcgcatggagggtttccccgtcacggtgcgggggctgagccgc
ttcacgtcgacgagggaatcgaaggagatcctcacggggctgaaggaaggcaccgtcgac
atcgtcataggcacccatcgcctgctgcagaccggcgtgtcgtggaagcagctgggcctt
gtcatcgtcgacgaggagcagcgcttcggcgtcgagcacaaggagcacatcaaggcgctg
cgcaaccacgtcgacgtgttgaccatgtcggcgaccccgatcccgcgcacgctggagatg
tccatggccggcatccgcgagatgagccagatcctcaccccgcccgaggaccggcacccg
gtgctgacctacgtcggcgcgcagtcggacaagcagatcgccgcggccatccgccgcgag
ttgctgcgcgatggccaggtgttctacctgcacaacaaggtcagcaccatcgacaaggcc
gcgcagaaggtccgcgacctggtgccggaggcacgcgtcgtcgtcgctcacggccagatg
ggcgaagagatgctcgagcgcacggtgcagggtttctgggaccgcgaattcgacgtgctg
gtgtgcacgaccatcgtggaaacgggcctggacatcgccaacgccaacacgctgatcgtg
gaaaacgcccaccacatgggcctgtctcagctgcaccagctgcgcggccgcgtgggccgt
tcccgcgagcgcgcctacgcctatttcctgtatccggcggaccagactctgacggagaat
tcctacgaccgcctggccaccatcgcgcagaacaatgatctcggcgccggaatggcggtg
gccatgaaggacctggaaatgcgcggggcgggaaatgtcctcggcgcggaacaatccggc
cacatttccggggtcggtttcgacatgtacgtccgattggtcggcgaagcggtcgccgcc
atgaaggcggtggccgacggcgaaacgcccgacgcgtccgcgcaggaaccgaaggaaatc
cgcatcgacctgcccgtcgacgcgaacatcccggccggctacgtcgactcggaacggctg
cgcctggaggcgtaccggaagttcgcgtcggcgcaggccatggaggacatcgacgtcgtc
ctcgacgagctcgtcgaccgctacggcgagccgccgatcgaagtgcagcgccttgcggcg
atttcgagattgcgaatcatttgccgcgagttcggcgtgcatgaggttcaagcgacgggt
gcgcacattaagatcggacccatggaactcgccgattcgaagcaggtgcgtttgaagcgc
ctgcatccgcaatcgacgtaccgggccgcatcccggaccgtttccgtggcggttccgaag
gaagggaagggtttgcgggccaagccggtgcgcgatgtcgcgctggtgcaatgggtcgcc
gattttctcaccggaatggcgggaatccccgtcatggacatcgtcggcggagcccacggc
ggaaaggatcagaaatga
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