Cellulomonas xiejunii: NP048_04260
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Entry
NP048_04260 CDS
T09093
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cxie
Cellulomonas xiejunii
Pathway
cxie03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cxie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NP048_04260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cxie03400
]
NP048_04260
Enzymes [BR:
cxie01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NP048_04260
DNA repair and recombination proteins [BR:
cxie03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NP048_04260
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UUI73690
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Position
886811..888463
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AA seq
550 aa
AA seq
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MTPPRSDATTEDVPPDEQSGRDALGTYRSMRDFTRTAEPAGAVPEPTGGPERRFVVQRHR
ARRLHYDVRFEIDGVLVSWAVPKGPTLDPTARRMAVHVEDHPLEYEAFEGVIPHGQYGGG
DVIVWDRGTWHPYKSDDPAAEVAGGQLHAELHGERLRGKFLLVRRDSGDGKDQWLMFHKR
DEHAVEGWDAEDHPTSVVSGRTNDEVAAHPDHIWRSGVPAAQAEVDLHPPVPDVPPPTDD
ELAALDDLGASGTWDVHGRRLRVTNLDKVLFPARDGEAPVTKRDLLRYTACVAPVALPYL
AGRALNMHRFPQGAATRGFWHKQLPDHAPDWVPRWDRPDADPGESTTYLVVDEPAALVWA
ANFGALEWHAWTSRTSAPDLPTYALIDLDPGTATAWEDVVLLARLHRDAFEHLGVRAFPK
LTGRRGIQIWVPVAVGLTFDETRAWVERLSRTVGKVVPDLVSWRWEVSERGGQARLDYTQ
NAVNKTLVAPYSPRASAGAPVSAPISWDELDADWLRPDAFTVRTVLDRVAEHGDLFRGVL
DGDQVLPRLT
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
ctgacgccaccgcggagtgacgccacgaccgaggacgtcccgcccgacgagcagtccggg
cgggacgccctcggcacgtaccgctcgatgcgcgacttcacgcgcacggccgagccggcc
ggtgcggtcccggaaccgaccggcggccccgagcggcgcttcgtggtgcagcggcaccgc
gcgcgtcgcctgcactacgacgtgcgcttcgagatcgacggcgtcctggtcagctgggcc
gtgccgaagggcccgacgctggacccgacggcgcgacgcatggccgtgcacgtcgaggac
cacccgctggagtacgaggcgttcgagggtgtgatcccgcacgggcagtacggcgggggc
gacgtcatcgtgtgggaccgcggcacgtggcacccgtacaagtccgacgacccggcggcc
gaggtcgcgggcgggcagctgcacgccgagctgcacggcgagcggctgcgcggcaagttc
ctgctggtgcgccgcgacagcggtgacggcaaggaccagtggctgatgttccacaagcgt
gacgagcacgcggtcgagggctgggacgccgaggaccaccccacgtccgtggtgtccggg
cggacgaacgacgaggtcgcggcccacccggaccacatctggcgctcgggcgtccccgcg
gcgcaggcggaggtggacctgcacccaccggtgcccgacgtgcccccgcccacggacgac
gagctcgcggcgctcgacgacctgggcgcgagcgggacgtgggacgtgcacgggcggcgc
ctgcgggtcaccaacctcgacaaggtgctgttccccgcgcgcgacggggaggcgccggtc
accaagcgtgacctgttgcgctacaccgcgtgcgtcgcgcccgtggcgctgccgtacctg
gcagggcgggcgctcaacatgcaccgtttcccgcagggtgccgccacgcgcggcttctgg
cacaagcagctgccggaccacgcgccggactgggtgccgcgctgggaccgccctgacgcc
gaccccggcgagtcgaccacctacctcgtcgtcgacgagcccgccgccctggtgtgggcc
gccaacttcggggccctggagtggcacgcgtggacgtcccgcacctccgcgcccgacctc
ccgacgtacgcgctcatcgacctcgacccgggcacggcgacggcgtgggaggacgtcgtg
ctgctggcccgcctgcaccgcgacgccttcgagcacctgggtgtccgcgcgttccccaag
ctcacggggcgtcgcggcatccagatctgggtaccggtcgcggtcggcttgaccttcgac
gagacgcgcgcgtgggtcgagcggctgtcgcggaccgtcggcaaggtggtgcccgacctc
gtcagctggcgctgggaggtcagcgagcgcggcggccaggcgcgcctggactacacgcag
aacgcggtcaacaagaccctcgtcgcgccgtacagcccgcgcgcgtccgccggcgcgccg
gtctcggcacccatctcgtgggacgagctcgacgcggactggctgcggcccgacgcgttc
acggtccgcaccgtgctggaccgggtggccgagcacggcgacctgttccggggcgtgctg
gacggcgaccaggtgctgccgcgcctgacctga
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