Synechococcus sp. JA-3-3Ab: CYA_1763
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Entry
CYA_1763 CDS
T00318
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cya
Synechococcus sp. JA-3-3Ab
Pathway
cya03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CYA_1763 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cya03400
]
CYA_1763 (mfd)
Enzymes [BR:
cya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CYA_1763 (mfd)
DNA repair and recombination proteins [BR:
cya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CYA_1763 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ABC99917
CyanoBase:
CYA_1763
UniProt:
Q2JTR6
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All DBs
Position
complement(1767740..1771210)
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AA seq
1156 aa
AA seq
DB search
MSFIPLVRFLAQSGLMQELAARLRSQRQADLQGAGRIPKGLIASALAQQEGRSLLVVTAT
LEEAGRWTAQLEGMGWESVQLYPTSEASPYEPFDLEPELVWGQFQVLADGLQGKKGMAIV
ATERALQPHLPPPEVFRAFCLKLEPGLEMSPQQLGQQLARLGYRRVSLVESEGEWSQRGD
ILDVFPVACEWPVRLEWFGNELERLREFDPVSQRSQDGIPYVWLTPTGYGPILWPALQEK
ADQLSQGLRQQLEQSPTPPEGLRRFLGLLYTPPANLLSYLDPTTLILIDEPEQCQAHSQQ
WLYHAQEQWKQAQVAEPALQPFHRPFDLHAPDWDPFPCLLARTFAPAGEAEAALDLKSRA
VPAIPHQFGSLAKTLREYRKQQLQVWILSAQPSRTVALLQEHDCPAQYVPNPKDFPAIER
QLQSYTPVALKYSSLADLEGFLLPTLGWVVLTDREFFGQHSLATPTYVRKRRQASSRQVD
PNLLKPGDFVVHKAHGIGQFLRLESLTIGGETREYLVIQYSDGLLRVAADQVNSLSRYRA
SSDGPPALHKMSGSTWEKTKQKVKKSLKKVAFDLLQLYAKRAEQEGYAFPPDSPWQQEFE
ESFPYPLTPDQIRAVQEIKRDMESPRPMDRLLCGDVGFGKTEVAIRAIFKAVTAGKQVAL
LAPTTILTQQHYHTLKERFAPYPIQVGLLNRFRTPEEKKEILARLKSGELDVIVGTHQLL
GKDVQFRDLGLLVIDEEQRFGVNQKEKIKLLKTQVDVLTLTATPIPRTLYMALSGLREMS
LIQTPPPSRRPIKTHLSPYNPEVIRTAIRQELDRGGQVFYVVNRIEGIEETSAKLREWVP
GARIAIAHGQMPEGELEATMLAFNNGEIDILVCTTIIESGLDIPRVNTILIENAQEFGLA
QLYQLRGRVGRAGIQAHAWLFYREDGILTEEARKRLQAIQEFTQLGSGYQLALRDMEIRG
IGNLLGTQQSGQLNAVGFDLYLEMLQEAIREIRGQEIPQVEDTQIDLNITAMIPQSYIPD
EDQKMQAYRQLAAAGSRVELLQIAQEWQDRFGPLPKPTQELLRVMELKILARTLGFSRIR
PAKEHVLLETPMEEPAWNRLKEALPAHLQSRFVYQPGKVTVRGLGMVPAAQQLENLLQWL
DKMSLALMEARIPTAT
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttatcccgctggtgcgctttctggcccaatctggcttgatgcaagagctggcc
gcccggttgagatcgcagcgacaggcagatctgcagggggcagggcggatcccgaagggg
ttgatcgcctcggctttggcccagcaggagggaagatccctgctggtggtgactgccact
ttggaagaggcgggccgctggacggcgcaactggagggcatgggctgggagagcgtgcag
ctttatcccacctccgaggcttccccttacgagccgtttgacctggagccggagctggtg
tggggtcagtttcaggtgctggccgatggtctccaggggaagaagggcatggccattgtg
gccacggagcgggccctccaaccccaccttccccctccagaggtgtttcgggccttttgc
ctcaagctggaacccggcctggagatgtcgccgcagcagttggggcagcagttggctcgt
ctgggctatcggcgggtaagcctggtggaaagcgaaggggagtggagccagagaggcgat
attctcgacgttttcccggtggcctgcgagtggccggtgcgcctggagtggtttggcaac
gagctggagcggctgcgggagtttgacccggtgagccagcgctctcaagacgggatcccc
tacgtctggctgacccccactggctacggacccatcctctggccggctctgcaggaaaaa
gccgatcagctctcccagggcctacggcagcagttggagcagtcgcccacccccccggag
ggcttgcgccgttttctcggcctgctctacacccctcccgccaatctgctcagctatctg
gatcccaccaccctcatcctgatcgacgagccggagcagtgccaggcccacagccagcag
tggctctaccacgcccaagaacagtggaaacaggcccaggttgcggagccggctctgcag
ccctttcaccgccccttcgatctccatgctcccgactgggatcccttcccctgcctgttg
gcccgcacctttgcccctgctggcgaagccgaagctgcccttgacctgaaaagccgggcc
gttcccgccatcccccaccagtttggatccctggccaaaaccctgcgcgagtaccgcaag
cagcagttgcaggtgtggatcctctctgcccagccctcccgcaccgtggccctgctgcag
gaacacgactgcccggcccagtatgtgcccaaccccaaagacttccccgccatcgagcgc
cagctccagtcctacacgccggtggccctgaagtactccagcttggcagatctggagggg
tttctcctgcccacgctggggtgggtggtgctcaccgaccgggagtttttcggccagcac
agcctggccacccccacctatgtgcgcaagcgccgccaggccagctcccgccaggtggat
cccaacctgctcaagccgggggattttgttgtccacaaggcccatggcatcggccagttc
ttacggctggaaagcctcaccattggcggcgaaacccgagaatacctggtcattcaatac
agcgatggcttgttgcgggtggctgccgaccaggtcaactccctctcgcgctaccgggct
agcagcgatgggccacctgccctgcacaaaatgtccggcagcacctgggaaaagaccaaa
caaaaagtcaaaaagagtctgaaaaaagtggcctttgatctcctgcagctctacgccaaa
cgggccgagcaggagggctacgccttccccccggattccccttggcagcaggagtttgag
gagtcttttccctaccccctgacgccggaccaaattcgcgctgtccaggaaatcaagcgg
gatatggagtcccctcgccccatggatagactgctgtgtggcgatgtgggctttggcaaa
acggaggtggccatccgcgccatctttaaggccgtaaccgccggcaagcaggtagctctt
ctagcgccaaccaccattctcactcagcagcactaccacaccctcaaagagcgctttgcc
ccctaccccattcaagtgggcctgctcaaccgcttccgcactcccgaagagaaaaaagag
atcctggcccgcctcaaaagtggcgaactcgatgtcattgtgggcacccaccaacttttg
ggcaaggatgtgcagtttcgcgatttgggtcttctggtcattgacgaagaacagcgcttt
ggcgtcaaccaaaaagagaaaattaaactcctcaaaacccaggtggatgtgctcaccctt
acggctacccccattccccgcacgctgtacatggctttgtcggggttgagggaaatgagc
ctgatccagactcccccgccctcgcggcgcccgattaaaactcacctttctccctacaat
cctgaggtcattcgcacggctatccgccaagagttggatcgcggcgggcaagtcttttat
gtggtcaaccgcattgaagggatcgaagagaccagcgccaaattgcgggaatgggtgccc
ggtgcccgcattgccattgcccatgggcagatgccggaaggggagctggaagcgaccatg
ctggcttttaacaacggagaaatcgatatcttggtctgcaccaccattattgaatccggt
ttagatattccccgtgtcaacactattttgatcgaaaatgcccaggagtttggtctggct
cagctttaccaattgcgaggacgggtgggccgggccgggatccaagctcatgcttggctg
ttctaccgagaagatggcatcctcaccgaagaggcccgcaagcgcctgcaggccattcag
gaatttacccaactgggatccggctatcagttggcgctgcgggacatggaaattcgcggc
attggcaacctcttgggaactcagcaatccggacaactcaacgcggtgggctttgatctc
tacttggagatgttgcaagaggcgattcgagaaattcgcggccaagagatcccgcaggtg
gaagacacgcaaattgacctcaatataacggccatgatcccgcagagctatatccctgac
gaagatcaaaagatgcaggcctatcgccaattggcggctgccggctctcgggtcgaactg
ttgcaaattgcccaggaatggcaggatcgctttggccccttgcccaagcccacccaggag
ctgctgcgggtgatggagctgaagattttggcccgcacgctgggcttttcccgcattagg
ccggccaaggagcatgtgcttttggaaacccccatggaggagccggcctggaaccgcctc
aaggaagccctgccggcccatttgcagtctcgctttgtctatcagccgggcaaggtgacg
gtgcggggcctgggaatggtgcctgcggcccagcaactggagaaccttttgcagtggctg
gacaaaatgagcttggccctgatggaagcccggatcccaacagccacctag
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integrated database retrieval system
