Synechococcus sp. JA-2-3B'a(2-13): CYB_1207
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Entry
CYB_1207 CDS
T00319
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cyb
Synechococcus sp. JA-2-3B'a(2-13)
Pathway
cyb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cyb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CYB_1207 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cyb03400
]
CYB_1207 (mfd)
Enzymes [BR:
cyb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CYB_1207 (mfd)
DNA repair and recombination proteins [BR:
cyb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CYB_1207 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABD02182
CyanoBase:
CYB_1207
UniProt:
Q2JM65
LinkDB
All DBs
Position
complement(1250050..1253526)
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AA seq
1158 aa
AA seq
DB search
MSFIPLVRFLAQSGLMQELAARLRSRRQADLQGAGRIPKGLIASALAQQEGRSLLVVTAT
LEEAGRWTAQLEGMGWESVQLYPTSEASPYEPFDLEPELVWGQFQVLADCLQGKKGMAIV
ATERALQPHLPPPEVLRAFCLQLEPGLEMFPQQLGQQLTRLGYQRVSLVESEGQWSQRGD
ILDVFPVACEWPVRLEWFGNELERLREFDPVSQRSQDGIPHVWLTPTGYGPILWPALQEK
ADQLSQGLRQQLEQSPTPPEGLRRFLGLLYDPPANLLSYLDPEALILIDEPEQCQAHSQQ
WLYHAQEQWKQAQVAEPALQPFHRPFDLHAPDWDPFPCLLARTFAPAGEAEAALDLKSRP
VPTAPHQFGSLAKTLREYRKQQLQVWILSAQPSRTVALLQEHDCPAQYVPNPKDFPAIER
QLQSYTPVALKYSGLAELEGVLLPTLGWVVLTDREFFGQHSLATPTYVRKRRQASSRQVD
PNLLKPGDFVVHKAHGIGQFLRLETLTIGGETREYLVIQYSDGLLRVAADQVNSLSRYRA
SGDGPPALHKMSGSTWEKTKQKVKKSLRKVAFDLLQLYAKRAEQEGYAFPPDSPWQQELE
DSFPYPLTPDQLRAVQEIKRDMESPRPMDRLLCGDVGFGKTEVAIRAIFKAVTAGKQVAL
LAPTTILTQQHYHTLKERFAPYPIQVGLLNRFRTSEEKKEILSRLKSGELDVVVGTHQLL
GKDVQFRDLGLLVIDEEQRFGVNQKEKIKLLKTQVDVLTLTATPIPRTLYMALSGLREMS
LIQTPPPSRRPIKTYLSPYNPEVIRTAIRQELDRGGQVFYVVNRIEGIEEASAKLREWVP
GARIAIAHGQMPEGELEATMLAFNNGEIDILVCTTIIESGLDIPRVNTILIENAQEFGLA
QLYQLRGRVGRAGIQAHAWLFYREDGILTEEARKRLQAIQEFTQLGSGYQLAMRDMEIRG
IGNLLGTEQSGQVNAVGFDLYLEMLQEAIREIRGQEIPQVEDTQIDLNVTAMIPQSYIPD
EDQKMQAYRHLAAAGSRVELLQIAQEWQDRFGPLPKPTQELLRVMELKILARTLGFSRIK
PAKEHVLLETPMEEPAWNRLKEALPTHLQPRFVYQPGKVTVRGLGMVPAAQQLENLLQWL
DKMSLALSRMEAGIPMTP
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttattccgctggtgcgctttctggcccaatctggcttgatgcaagagttggcc
gcccggttgagatcacggcgacaggcagatctgcagggggcagggcggatcccgaagggg
ttgatcgcctcggctttggcccagcaggagggaagatccctgctggtggtcactgccacg
ctggaagaagcgggccggtggacagcgcaattggagggcatgggctgggagagtgtgcag
ctctaccctacttcagaggcttccccttacgaaccttttgacctggaaccggagctggtg
tggggtcagtttcaggtgctggccgattgcctccaggggaagaagggcatggccattgtg
gcgacagagcgggccctccaaccccacctccctcccccagaggtgttgcgggccttttgt
ctccagctggaacccggcttggagatgtttccccagcaactggggcagcagttgacccgt
ctgggctaccagcgggtgagtctggtggaaagcgaggggcagtggagccaaaggggcgac
attctcgacgttttcccggtggcctgcgaatggccggtgcgcctagagtggtttggcaac
gagctggagcggctgcgggagtttgacccagtcagccagcgctcccaagatgggatcccc
cacgtctggctgacccccactggctacggacccatcctctggccggctctgcaggaaaaa
gccgatcagctctcccagggcctacggcagcagttggagcagtcgcccacccccccggag
ggcttgcgccgttttcttggcctactctacgatccgccagccaacctgctgagctatctg
gatcccgaggctttgatcctgatcgacgagccggagcagtgccaagcccacagccagcag
tggctctaccacgcccaagaacagtggaaacaggcccaggttgcggagccggctctgcag
ccctttcaccgccccttcgatctccatgctcccgactgggatcccttcccctgcctgttg
gcccgcacctttgcccctgctggcgaagccgaagctgcccttgacctaaaaagccggcct
gtgcctactgctccccaccagtttggatccctggccaaaaccctgcgcgagtaccgcaag
cagcagttgcaggtgtggatcctctctgcccagccctcccgcaccgtggccctgctgcag
gaacacgactgcccggcccagtacgtgcccaatcccaaagacttcccggccatcgagcgc
cagctacagtcctacaccccagtggccctcaagtattccggcctggccgagctggagggg
gttctcctgcccaccttggggtgggtggtgctcaccgaccgcgagtttttcggccaacac
agcctggccacccccacctatgtgcgcaagcgccgccaggccagctcccgccaggtggat
cccaacctgctcaagccgggggattttgttgtccacaaggcgcatggcatcggccaattc
ctgcgcctggaaaccctcaccattgggggcgaaacccgcgagtacctggttattcaatac
agcgatggcctgttgcgggtggctgccgaccaggtcaactccctttcccgctaccgcgcc
agcggggatggaccacctgccctgcacaagatgtccggcagcacctgggaaaagaccaaa
cagaaggtgaaaaagagcctgcgaaaagtggcctttgacctgctgcagctctatgccaaa
cgcgccgaacaggagggctatgccttcccgcccgattctccttggcaacaggagctggaa
gattctttcccctatcccctgacgccggatcaactccgagctgtccaggagatcaagcgg
gatatggaatctccacgccctatggatcggctgctgtgtggggacgtgggctttggcaaa
acggaagtggccatccgcgccattttcaaggccgtaaccgccggcaagcaagtggctctt
ttggcgccaaccaccattcttacccagcagcactaccacaccctcaaagagcgctttgct
ccctatcctattcaagtgggcttgctcaaccgcttccgcacctcggaggagaaaaaagaa
atcctatcccgtctcaagagtggcgaactggatgttgtggtgggcacccaccagcttttg
ggcaaggatgtgcaatttcgggatttaggccttttggttattgacgaagagcagcgcttt
ggcgtcaaccaaaaagagaaaatcaaacttctcaaaacccaggtggatgtactcaccctc
accgccacccctattccccgcactctgtatatggccttgtcgggtttgcgggaaatgagc
ttgatccaaactccgcctccttcccgccggcctatcaaaacttacctttctccctacaac
cccgaagtcatccgcacggctatccgccaagagttggatcgcggcggtcaagtcttctat
gtcgtcaaccgcattgaaggcatcgaagaagccagcgccaaattgcgggaatgggtgccc
ggcgcccgcattgccattgcccacgggcagatgccggaaggggagctagaggcaacgatg
ctggcttttaacaatggggaaatcgatatcctggtctgcacgacgattatcgaatccggt
ttggatattccccgcgtcaacaccattttgattgaaaatgctcaggagtttggattggct
cagctataccagctgcgggggcgggtgggccgggctgggatccaagcccatgcttggctg
ttttaccgagaagacgggatcctcaccgaggaggcccgcaaacgcctacaggccattcag
gaatttacccaactgggatccggctatcagttggcaatgcgggatatggaaattcgcggc
attggcaacctgctgggaacggaacaatccgggcaagtcaatgcggtgggcttcgatctt
tacctggaaatgttgcaagaagccattcgagaaattcgcggccaggagatcccacaggtg
gaggacacgcaaatcgacctgaatgttaccgccatgatcccgcaaagctatatccccgac
gaagatcaaaagatgcaggcttatcgacacctggctgctgccggctctcgggtcgagctg
ttgcaaattgcccaagaatggcaagaccgctttggccccctgcccaagcctacccaggag
ctgctgcgggtgatggagctgaagatcctggcccgcaccctgggcttttcccgcatcaaa
ccggccaaagagcatgtgcttttggaaacccccatggaggagccggcttggaatcgcctg
aaagaggctctgcccactcacctgcagcctcgctttgtctaccaaccgggcaaggtgacg
gtgcgagggctggggatggtgccggcggcgcagcaactggagaaccttttgcagtggctg
gacaagatgagcctggccctgagccggatggaggctgggatcccaatgaccccctag
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