Cyanobium sp. NIES-981: CBM981_0219
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Entry
CBM981_0219 CDS
T04888
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cyi
Cyanobium sp. NIES-981
Pathway
cyi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cyi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CBM981_0219 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cyi03400
]
CBM981_0219 (mfd)
Enzymes [BR:
cyi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CBM981_0219 (mfd)
DNA repair and recombination proteins [BR:
cyi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CBM981_0219 (mfd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
SBO41930
UniProt:
A0A182ALJ2
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All DBs
Position
I:complement(174822..178391)
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AA seq
1189 aa
AA seq
DB search
MPLAALVRQLQQAPLTGEVLERSHRGERLRLSGAGRAARALISSALAGAAQAPLLVVVPT
LEEAGRWAALLELMGWSSSQLYPTSEGSPYEGFDPTSEITWGQLQVLGELLDRGGATPSQ
DRLAIVATERALQPHLPPPDALRAQCLSLRKGQSIDLEQLAASLTRLGYTRVATIDQEGT
WSRRGDIVDVFPVSAELPVRLEFFGEDLEKLREFDPTTQRSLDATDVVRLTPTGYAPLIA
EALRESMPDALEQLLRPEALEQLLEGGTPEGLRRLMGLAWAEPASLLDYLPASAVIAVDE
RRHCLAHGQQWFEHAGEHHADVARELGAAPPAVLHRPASEALAAVEAFPGFDLAELHESD
SHPNSFDLAARPVPAHPNAFGRLAALIKGFQQEKARVWLLSAQPSRAVALLEEHDCITRF
VPNPADGPAIDRLIEQNTPVALKVRGTVELEGLQLPAWKLVLITDREFFGQHALAASGYV
RRRRKAASRTVDPGKMQPGDYVVHRNHGIGRFLKLEKLAIAGEERDYLVVQYADGLLRVA
ADQLGSLGRYRATSDSPPDLNRMGGTAWSKAKERVRKAVRKVALDLVKLYAERHRAPGFP
FPPDGPWQNELEDSFPYEPTPDQVKAIAEVKRDMEQPQPMDRLVCGDVGFGKTEVAIRAI
FKAVTAGRQVAMLAPTTVLAQQHWRSLSERFAPYPVKVSLLNRFRTAAERRVIQEGLAAG
TVDVVVGTHQLLGKGTSFKQLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRT
LYMSLSGVREMSLITTPPPLRRPIKTHLAALDEEAVRSAIRQELDRGGQIFYVVPRVEGI
EEVAEQLRQMLPGLRLLVAHGQMAEGELESAMVAFNAGEADLMLCTTIVESGLDIPRVNT
ILIEDAHRFGLAQLYQLRGRVGRSGVQAHAWLFYPGDASLSEAARQRLRAIQEFAQLGSG
YQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPKVDDTQIDLP
ITAFIPGDWITENDEKMAAYRAAADCASKEALVELAAGWVDRYGAIPAPVTALLQLMELK
LVARRCGFSRIKPEKPNIVLETPMEEPAFRLLRQGLPQHLHGRLVYQAGSGSTAKVLARG
LGVLPMERQLEELMGWLNQMADQIPGADGLTQAQRAEAQTTRNAEVLRV
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgcccctcgccgccctggtgcgccagctgcagcaggcccccctgaccggtgaggtgctg
gagcgcagccatcggggtgagcgcctgcggctgagcggcgccggccgcgccgcccgggcc
ctgatcagcagtgccctggccggagccgcccaggccccgctgctggtggtggtgcccacc
ctggaggaggccgggcgctgggcggcgctgctggagctgatgggctggagcagcagccag
ctctatcccaccagcgagggcagcccctatgagggcttcgatcccaccagcgagatcacc
tggggccagctgcaggtgctcggcgaactcctcgatcgcggtggtgccacgccatcccag
gaccggctggcgatcgtggccaccgaacgggcccttcaaccccacctgcccccaccggat
gcgctcagggcccagtgcctcagcctgcgcaagggccagagcatcgatctggagcagctc
gccgccagcctcacccggctggggtacacccgcgtagcgacgatcgaccaggagggcacc
tggagccgccgcggcgacatcgtggacgtgttcccggtgagcgccgaactgccggtgcgg
ctggagttcttcggcgaggacctcgagaagctgcgggaattcgatcccaccacccagcgc
tccctcgatgccaccgacgtggtgcgcctcacccccaccggctacgcccccctgatcgcc
gaggcgctgcgggagtcgatgcccgacgcgctggagcagctgctccgccccgaggccctg
gaacagctgctggaggggggcaccccggaggggttgcggcggctgatgggcctggcctgg
gccgaacccgcctccctgctggactacctgccggcctccgccgtgatcgctgtggacgag
cggcggcactgcctggcccatggccagcagtggttcgagcatgccggcgagcaccacgcc
gatgtggccagggaactgggggcagccccgcccgccgtgctgcatcgccccgccagcgag
gccctcgccgccgtggaggccttcccgggcttcgatctggcggaactgcacgagagcgac
agccatccgaacagcttcgatctggccgcgcgcccggtgccggcccatccgaacgccttc
ggcaggctggccgccctgatcaaggggttccagcaggagaaggcgcgggtgtggctgctc
tcggcccagccgtcgcgcgccgtggcgctgctggaggaacacgactgcatcacccgcttc
gtgcccaaccccgccgatgggccggcgatcgatcggctgatcgagcagaacaccccggtg
gcgctgaaggtgcgaggcactgtggagctggagggcctgcagctgccggcctggaagctg
gtgctgatcaccgaccgggagttcttcggccagcacgccctggccgccagcggctacgtg
cgccggcgccgcaaggcggccagccgcacggtggatccgggcaagatgcagccgggtgac
tacgtggtgcaccgcaaccacggcatcggccgcttcctcaagctcgagaagctcgccatc
gccggcgaggagcgcgactacctggtggtgcagtacgccgatgggctgctgcgggtcgcc
gccgaccagctcggcagcctgggccgctaccgcgccaccagcgacagcccgccggacctc
aaccgcatgggcggcacggcctggagcaaggccaaggagcgggtccgcaaggcggtgcgc
aaggtggctctcgatctggtgaagctctatgccgaacggcaccgggccccgggattcccc
ttcccccccgacggcccctggcagaacgagctcgaagactccttcccctacgagcccacc
cccgatcaggtgaaggcgatcgccgaggtgaagcgcgacatggagcaaccccagcccatg
gaccggctggtgtgcggcgacgtgggcttcggcaagaccgaggtggccatccgcgccatc
ttcaaggccgtcaccgccggccggcaggtggcgatgctcgcccccaccacggtgctggcc
cagcagcactggcgctccctctccgagcgcttcgcgccctacccggtgaaggtgagcctg
ctgaaccgcttccgcaccgcggcggagcgcagggtgatccaggagggcctggcggcgggc
acggtggacgtggtggtgggcacccaccagctgctgggcaagggcaccagcttcaagcag
ctgggcctgctggtggtggacgaggagcagcgcttcggcgtgaaccagaaggagaagatc
aaggccctgcgcaaggacgtggacgtgctgaccctcagcgccacgcccattccccgcacc
ctctacatgagcctgtcaggggtgcgggagatgagcctgatcaccacgccgccgccgctg
cgccgcccgatcaagacccacctcgccgccctggatgaggaggcggtgcgcagcgccatc
cgccaggagctcgaccgggggggccagatcttctacgtggtgccgcgggtggaggggatc
gaggaggtggccgagcagctgcggcagatgctgccgggcctgcggctgctggtggcccat
ggccagatggccgaaggcgagctggagagcgccatggtggccttcaacgccggtgaggcc
gacctgatgctctgcaccacgatcgtggagagcggcctggacatcccccgggtcaacacg
atcctgatcgaggacgcccacaggttcggcctggcccagctgtaccagctgcggggccgg
gtgggccgcagcggcgtgcaggcccatgcctggctcttctatccgggtgatgcctccctg
agcgaggcggcgcggcagcggctgcgggcgatccaggagttcgcccagctggggtccggc
tatcagctggcgatgcgggacatggagatccgcggcgtgggcaacctgctcggggtggag
cagagcggccagatggaggccatcggcttcgacctctacatggagatgctgcaggaatcg
ctcgccgagatccagggtcaggacatcccgaaggtggacgacacccagatcgacctgccg
atcaccgccttcatccccggcgactggatcaccgagaacgatgagaagatggccgcctac
cgcgccgctgccgactgcgccagcaaggaggccctggtggagctggccgctggctgggtg
gaccgctacggcgccatccccgctccggtgaccgccctgctgcagctgatggagctgaaa
ctggtggccaggcgctgcggcttctcgcggatcaagccggagaagcccaacatcgtcctg
gagacgccgatggaggagcccgccttccggctgctgcgccagggcctgccccagcatctg
cacggccggctggtgtaccaggccggcagcggcagcaccgccaaggtgctggcccggggc
ctgggggtgctgccgatggagcggcagctggaggagctgatgggctggttgaaccagatg
gccgaccagatccctggcgccgatggactcacccaggcccagcgcgccgaggcgcagacc
acccgcaacgccgaggtgctgagggtgtga
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