Gloeothece verrucosa: Cyan7822_5030
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Entry
Cyan7822_5030 CDS
T01310
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cyj
Gloeothece verrucosa
Pathway
cyj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cyj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cyan7822_5030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cyj03400
]
Cyan7822_5030
Enzymes [BR:
cyj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cyan7822_5030
DNA repair and recombination proteins [BR:
cyj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Cyan7822_5030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADN16917
UniProt:
E0UIE9
LinkDB
All DBs
Position
complement(5472550..5476059)
Genome browser
AA seq
1169 aa
AA seq
DB search
MSFDSIIRAIGRSPLTTELLGKLKRHQALQLSGIPRLPKGLIASSLAQTENHNLLIICPT
LEEAGRWATQLEAMGWKTVHFYPTSEGSPYDPLNPESEMIWGQLQVLSGINNPEAFVQGE
RENSKQQYALVTTEKALQPHLPPPQQLYAYCLNFQQGMTQEVKTLDTALTRLGYERVNLV
ETEGQWSRRGDIVDIFPVSAELPVRLEWFGDELEQLREFDPATQRSLDQITQLTLTPISY
FPIIADSILNPEKVLSPYLSAEQLEGIENRNFPEGMQRFLGLAYEKPASLLDYLPPNTFC
VFDEVEQCQAHSDRWIEYIEEQWQDLDPPLPKIHRIFRESLELSQQFPILYLSEIAEEVP
KTEIPNLDLSSRPLPVTPNQFARLAEILRGKREIYSGINLNKYAIWLVSAQPSRTVSLLE
EHDCPAQYIPNPRDYPAIDKYQTQDTAIALKYSGLAELEGFILPTYRIVVVTDKEFFGQQ
TLVTGAYVRKRRRAASKQVNLDKLRPGDYVVHRHHGIGKFIKLEILESREYVLIQYADGT
LRIPSDSLDSLSRYRQTGNHPPELHRMAGKAWEQTKQKVRKSVKKLAVDLINLYAKRAQQ
EGFSFPTDSPWQQELEDSFPYQPTPDQLKAVQEVKRDLESDRPMDRLVCGDVGFGKTEVA
VRAIFKAVTSGNKQVAFLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTPSENKDILQ
RLSTGELDIVVGTHQLLSNKIKFKDLGLLVIDEEQRFGVNQKEKIKTLKTQVDVLTLTAT
PIPRTLYMSLSGVREMSLITTPPPSRRPIKTHLSPYNSDVIRTAIRNELDRGGQIFYVVP
RVEGIEEVAAEIRQMVPTARIAIAHGQMDVSELETTMLAFNNGEADVLVCTTIIESGLDI
PRVNTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWLVYPHKAALTETARQRLRALQEFT
QLGSGYQLATRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLQDAIREIQGQEIPKVEDT
QIDLKLTAFIPADYISDINQKMDAYRTIATANSPADLKQIAADLCDRYGALPSPVEQLLQ
VIELKQLAKSLGFSRIKPDGKQHVVLETPMEEPAWKLLEENLPKHLQGRFVYSPKKVTVR
GLGVVKPKKQLESLIEWLEKMKGALPEII
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgagctttgattcaatcattcgtgccatcgggcgatcacccctaacaactgaactcctc
ggtaaactcaaacgccatcaagccttacagttaagcggcattccccgtttacctaaagga
ctgatcgcctctagtttggcacaaactgaaaatcataacttattaatcatctgcccgaca
ttagaagaagccggacgttgggcgacgcaactagaggccatgggatggaaaacggttcat
ttttatcccacttcagaaggttccccctatgatcccttaaaccctgaatctgagatgatt
tgggggcaattacaagttttatcaggcattaataaccctgaagcctttgttcagggtgaa
cgggaaaactcaaaacagcaatatgctttagtcaccacagagaaagccttacagccgcat
ctgcccccaccccaacaattgtatgcttattgcctgaacttccaacagggaatgactcag
gaagtcaaaaccttagatacagccttaacgcggctaggatatgaacgggttaacttagta
gaaaccgaaggacaatggagtcgccggggggatatcgtggatatatttcccgtttctgct
gaactgcccgtccgtctagaatggtttggggatgaattagaacaactgcgggaatttgat
ccagccactcaacgatctttggatcagatcactcaattaaccctaacccccatcagttac
tttcccattattgctgatagtattttaaatcctgaaaaagtcttatcaccctatttatcg
gctgaacaactcgaaggaatagaaaaccgcaacttcccagaaggaatgcagcgattttta
gggcttgcctacgaaaaacccgcctctttattggattatttgccgcccaatactttctgc
gtttttgatgaagtcgaacaatgtcaggctcatagtgatcgttggatagaatatatagaa
gaacaatggcaagatttagacccccccttgccaaaaatacatcgaatttttcgagaatct
ctagaattgagtcagcaatttcctatcctttacttatcagaaattgctgaagaagttcct
aagacagaaatacctaatttagatttatcgagtcgtcctcttcccgtcactcccaatcag
tttgccagattagccgaaatattgcgaggaaaaagagaaatttatagcggcataaatctt
aataaatacgccatttggttagtttctgctcaaccttcccgcaccgtttctttactcgaa
gaacatgattgtcctgcccaatatatccccaatcctcgggactatcctgctattgacaaa
tatcaaacccaggatacagccatcgcccttaaatactcaggattagcagaattagaaggc
tttatattacccacttatagaattgttgttgtcaccgataaagaattttttggacaacaa
acattagtcacaggtgcttatgtccgtaaacgtcgccgcgccgcttccaaacaagttaat
ctagataaattaagacccggtgattatgtcgttcatcgccatcatggcatcggtaaattt
attaaattagaaatattagaatctcgagaatatgtcctcattcaatatgccgatggaacc
ttaagaatcccttcagattcattagatagtttatcccgctatcgtcaaaccggtaatcat
cctcccgaactccatagaatggccggcaaagcctgggaacaaactaaacaaaaagttcgc
aaatcggtgaaaaaattagcagtagatttaatcaatctctacgctaaacgcgctcaacaa
gaaggcttttccttcccaactgatagcccttggcaacaagaattagaagactcttttccc
tatcaacccacacccgatcaactcaaagccgttcaagaagtgaaacgcgacttagaaagc
gatcgcccgatggatcgtttagtgtgtggcgatgtgggatttggcaaaacagaagtcgct
gtccgtgccatttttaaagccgttaccagtggcaataaacaggtcgcatttcttgccccg
acgacaattttaactcaacaacattatcatactcttaaagaaagatttgctccctatcct
atcaatattggtttactcaaccgttttcgaactccttcagaaaacaaagacattttacag
cgtttatccacaggagaattagatatcgtcgtcggaactcatcaactcctcagtaacaaa
attaaatttaaagacttgggtttattagtaatcgatgaagaacaacggtttggggtaaat
caaaaagagaaaatcaaaaccttaaaaacccaggtagatgttttaaccttaaccgcaacc
cctattcctagaacattatatatgtccctttcaggcgtgcgagaaatgagtttaatcacc
actcctccaccctcacgccgccccattaaaacccatttatccccttataattcagatgtg
atccgaacagccattcgcaacgaattagaccgaggaggacagattttttatgtggttcct
agagtagaaggaatcgaagaagtcgccgcagaaattcgccaaatggttcctactgctaga
attgccattgcacatggccaaatggacgtatcagaattagaaaccaccatgttagccttt
aacaatggggaagctgatgttttagtctgtacaaccattattgaatcaggtttagatatt
cctagagtcaataccatcattgtcgaagatgcccaaaaattcggattatcccaactttat
caactgcgagggcgggtagggcgttcaggaatacaggcccatgcttggttagtttatccc
cataaagccgccttaacagaaaccgcgcggcaacggttacgcgccttacaagaatttact
caattagggtcaggatatcaattagccacaagagacatggaaattcgcggcgtgggaaat
cttttaggggctgaacaatctgggcaaatggaggctataggatttgatttatatatggag
atgctacaagatgccattcgagagattcaaggacaagaaattcccaaggtagaagatacc
caaatcgatctcaaattgacggcttttattcctgccgattatattagcgatatcaaccaa
aaaatggatgcttaccgcaccattgctacagccaattcacccgcagatttaaaacaaatt
gctgccgatttatgcgatcgttatggggcgttaccttctcctgtagaacagttattacag
gttatagaattgaaacagcttgccaagtctttgggattttctcgcattaaaccggatgga
aaacagcacgttgttttagaaacgccgatggaagaaccggcttggaagttgttagaggaa
aatttgccgaaacatttgcaaggacggtttgtttatagtccgaagaaagtcacggtgaga
gggttaggggttgtgaaacctaagaaacagttggagagtttgattgagtggttggagaag
atgaagggggctttaccggagataatttga
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integrated database retrieval system
