Cyanothece sp. PCC 7425: Cyan7425_1827
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Entry
Cyan7425_1827 CDS
T00836
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cyn
Cyanothece sp. PCC 7425
Pathway
cyn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cyn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cyan7425_1827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cyn03400
]
Cyan7425_1827
Enzymes [BR:
cyn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cyan7425_1827
DNA repair and recombination proteins [BR:
cyn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Cyan7425_1827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_16
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACL44194
UniProt:
B8HS88
LinkDB
All DBs
Position
1696866..1700375
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AA seq
1169 aa
AA seq
DB search
MTLAAIVRALVKAPLTTELLNKLQQQHVLDLKGAARLPKGLVASALAQGQQHNLLVITPT
LEEAGRWAAQMEALGWSTVHFYPTSEASPYEPFDLEAEMTWGQLQVLADLLKAQQNDKQA
GQPGLAIVATERALQPHLPPVAAFQPDCLTLTQGMEMELKPLSDRLAQLGYERVALVETE
GQWSRRGDIIDVFPVACELPVRLEWFGDELDKIREFDPATQRSLDSIDQLILTPTSFSPI
ILSALQEAQRQQLKTVLAPEEQEKLATGQTPEGMRRFLGLAFAHPASLLDYLPDNTLIAI
DEVDQCRAHSDRWVEAAAEHWQQIQSPLLIPIHRPFNETLAPAEVFQRLLLSELVETVAS
STSSPATLNLASRPVPAIPHQFGKLAETLRTERERNFAIWLVSAQPSRSVALLQEHDCPA
QFVPNPNDFPAIDKLQIQRTPIALKYSGLAELEGFILPTFRLVVVTDREFFGQHLLATPS
YVRKRRRAASKQVDPNKLQPGDYVVHRQHGIGKFLKLESLTINRETREYLVLQYADGLLR
VAVDQLGSLSRFRATAEQAPELNKMTGKAWERTKSKVRKAIRKIAVDLLQLYAQRSQQQG
FAFPLDQPWQEELEESFPYQPTPDQVKAIQDVKRDMESDRPMDRLVCGDVGFGKTEVAVR
AIFKAITAGKQVAFLAPTTILTQQHYHTLKERFAPYPIQIGLLNRFRSADERKNILQRLK
TGELDVVVGTHQLLGKGVVFRDLGLLVIDEEQRFGVNQKEKIKTLKTQVDVLTLSATPIP
RTLYMALSGVREMSLITTPPPSRRPIKTHLAPYDPETIRSALRQELDRGGQVFYVVPRVE
GIEEVAAKLREMVPSARIAIAHGQMEEGELEATMLTFNNGEAEILVCTTIIESGLDIPRV
NTILIEDAQKFGLSQLYQLRGRVGRAGIQAHAWLFYPKLNMLTEAARQRLRALQEFTQLG
SGYQLAMRDMEIRGVGNLLGAEQHGQMDTVGFDLYMEMLDEAIAEIRGQEIPKVDDTQID
LNLTAFIPADYIPDLDQKMSAYRAVASADSTVELAQIKTDWNDRYGPIPSAALQLIRVVE
LKQIAKKLGFSRIKPEGTQHIILETPMEEPAWNLLKANLPEHLHTRFVYSPGKVTVRGLG
VVPADRQLENLIDWLSKMQGALPENILTT
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgactttagcggcgatcgtgcgggcgttggtcaaggcccccctgacgacagaattactg
aacaaactccagcaacagcacgttctagacctgaagggggcggcccgtctacccaaagga
ctggtggcctctgccctggcccagggacagcagcacaatctgttagtgatcacccccacc
ctggaagaagcggggcgctgggcagcacagatggaagctttaggctggtcaacagttcac
ttttaccccacctcggaagcgtccccctacgaaccctttgacctggaagctgaaatgacc
tgggggcaactacaggttttagccgatctgttaaaggctcagcaaaatgataagcaagcg
ggacagccgggtctggcaatcgtggctacggaacgggctttacaaccgcatctgccccct
gtagcagcctttcaacccgactgtctgacgttgacccagggcatggaaatggagctgaag
cccttgagcgatagactggcccagttggggtatgagcgggttgcgctggtcgaaacagaa
gggcaatggagccgtcgtggcgatattattgacgtttttccggtagcctgcgaattgccg
gtgcggttggaatggtttggggatgaactggataaaatccgcgagtttgaccccgccacg
cagcgctctctcgatagcattgaccagcttattctcacccccaccagtttcagtcccatt
attctgtctgccctccaggaggctcagcggcaacagcttaaaacggtactggccccggag
gaacaggagaaattagcaactggccagacgcctgaaggaatgcggcgctttttaggtcta
gcctttgcccaccccgcctctctactggattatctgccggacaataccctgattgcgatc
gatgaggtggatcaatgccgtgcccatagcgatcgctgggtggaagccgccgctgaacac
tggcaacaaatccaatctcccctgctgatacccattcatcgtcccttcaatgaaaccctg
gcccctgccgaagttttccaacggctattgctctcggaactggtggaaaccgttgcctca
tcaacctcctccccagccactctcaatctggccagtcgtcccgtccccgccattccccac
caatttggcaagctggcagaaacattacggactgaacgggaacgcaattttgccatctgg
ttagtttcagcccaaccttcccgatcggtggcgctcttacaggaacacgattgcccggcc
caatttgtccccaacccgaatgactttccagcgatcgacaagttacaaatccagcgcacc
cccatcgctttgaaatattctgggctggcggagctggaagggtttattttgcccacattt
cggttggtggtggtcaccgatcgagaattttttggacagcatctactggccacccccagc
tatgtgcgtaaacgtcgccgcgccgcctccaaacaggttgatccgaacaaactgcaaccg
ggggactatgtggttcaccgccagcatgggattggcaaatttttgaaactggaaagcctg
acgattaaccgggaaacacgggaatatctggtcttacaatacgccgatggcttgctgcgg
gtggcggtggatcaactcggttccctatcccgttttcgggccacggctgagcaggctcct
gaactgaataagatgacgggcaaagcctgggaacgcaccaaaagcaaagttcgcaaagcg
attcgcaaaattgcggtggatttgctgcaactctatgcccagcgatcgcaacaacaggga
tttgcctttcccctcgatcagccctggcaggaagagttagaagagtcttttccctatcaa
cccacccccgaccaggtgaaggcaattcaggatgttaaacgggatatggaaagcgatcgc
cctatggatcggctcgtctgtggtgatgtcggctttggcaaaacggaagtagcggtgcgg
gctatttttaaggccattacagccggaaaacaggtggcttttctggctcccaccacgatt
cttacccagcagcactatcacaccctcaaggaacggtttgctccctatccaattcagatt
ggactcctgaatcgatttcgcagtgctgatgagcgtaaaaatattctgcaacggctgaaa
accggcgaattagatgtggtcgtgggcacccatcaactcttgggcaaaggggtggtcttc
cgcgatctgggtttacttgtgatcgatgaagaacagcggtttggcgtgaatcaaaaggaa
aaaatcaaaaccttaaaaacccaggtggatgtgctcaccctttctgccacaccgattccc
cggacgctctatatggccctgtctggggtgcgagaaatgagtttaattaccaccccaccc
ccctcccgtcgcccgatcaaaacccatctggccccctacgacccggaaacgattcgctca
gccctgcgccaggaactcgatcgcggcggtcaggtgttctatgtggttccccgtgtggaa
gggattgaagaggttgcagcaaaattgcgcgaaatggttcccagtgctcgaattgcgatc
gcccacggccagatggaagaaggcgaactggaagccacgatgctgacctttaacaatggg
gaagccgaaattttagtttgtaccaccattattgaatctggcctggacattccccgcgtc
aatacgattctgattgaagatgcccagaaatttggcctatcgcagttgtaccagttgcgg
ggacgggtgggccgggccggaattcaagcccatgcctggctcttttatcccaaactgaat
atgctcacggaagcagcccggcaacgattacgcgctctgcaggaatttacccagctgggt
tccggttatcaactggcgatgcgggatatggaaattcgtggggtgggtaatctgctgggg
gccgaacagcacggtcagatggatacggttggttttgacctctatatggaaatgttagac
gaggcgatcgctgaaattagaggtcaggaaattcccaaagttgatgacacccaaattgat
ctgaatctcaccgcctttatccccgctgattacattcccgatttagatcaaaagatgagc
gcttaccgggccgtggcctccgctgattcaactgtagaattagcccaaattaaaaccgac
tggaacgatcgctatggcccgattcccagtgccgccttacaactgattcgcgtcgtcgag
ctgaaacaaattgccaaaaaactgggcttttcccggattaaaccggaaggaactcagcac
attattctggaaaccccgatggaagaaccggcctggaatttgctcaaagctaacttgccc
gaacatctgcatacccgctttgtctatagccccggtaaagtcaccgtgcgtggtttgggc
gttgttcccgccgacagacaactggaaaacctgatcgactggttgagcaaaatgcaaggg
gccttgccagagaatatattaacaacttga
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