Rippkaea orientalis PCC 8801: PCC8801_4312
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Entry
PCC8801_4312 CDS
T00806
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cyp
Rippkaea orientalis PCC 8801
Pathway
cyp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PCC8801_4312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cyp03400
]
PCC8801_4312
Enzymes [BR:
cyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PCC8801_4312
DNA repair and recombination proteins [BR:
cyp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PCC8801_4312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
UB2H
DUF515
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACK68234
UniProt:
B7JVA1
LinkDB
All DBs
Position
complement(4530027..4533503)
Genome browser
AA seq
1158 aa
AA seq
DB search
MTLSSLIRNLQKSPLTKELLEKLNKTGSLGLKGVPRLPKGLVSSALAQSLDNNLLVICAT
LEEAGRWAAQLEMMGWKSVNFYPTSEASPYEAFNPESEMIWGQMQVLSILNSQQNGLAIV
TTEKALQPHLPPSTVFETYCFNLQIGITKTSQEIDETLVRLGYERVALVETEGQWSRRGD
IVDIFPVSSELPIRLEWFGDALEKIRELDPATQRSLDKLEQVILTPTSFNPIIANTLKNK
NINLQNYLSDEEKEGLDNANFPEGMARLLGIAFEQPASLLDYLRENTLCVFDEVEQCQSH
SDRWLDYVEDNWQELDPPLPKIHRPFSESLKLAKKFPILYLSELSEVTDKNALDLSSRPI
PTTPHQFAKIAEILRGKREIYSGITLNKYSTWLISAQPTRTVSLLEEHDCPAQFIPNKKD
YPGIEKCHIQGTAVALKYSGVAELEGFILPTFRIVVITDREFFGQHVLAPSGYIRKRRRA
ASKQVDLNQLNPGDYVIHKNHGLGKFLKLESLATREYLVIQYEDGLLRVPADSFDSLSRY
RHTGSHPPELHKMTGKIWEKTKQRVRKSIKKLAVDLLNLYAKRAKKEGFIYPPDTPWQEE
LEDSFPYQPTPDQLKAVQDVKMDLESDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGHKQ
VALLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTTSEKKDIVQRLATGELDIVVGTH
QLLGQSVKFKNLGLLVIDEEQRFGVNQKEKIKVLKTEVDVLTLTATPIPRTLYMSLSGIR
EISLITTPPPSRRPIKTHLSSYNPDVVRTAIRNELDRGGQIFYVVPRVEGIEEVAGQIQQ
MVPSARIVIAHGQMDVNDLEMTMLGFNNGEADILVCTTIIESGLDIPRVNTIIVEDAQKF
GLSQLYQLRGRVGRSGIQAHAWLLYPNKGQLSETARQRLRALQEFSQLGSGYQLATRDME
IRGVGNLLGAEQSGQMMAIGFELYMEMLQEAIKEIQGQEIPKVDETQIDLQLTAFIPSDY
IPDLQQKMDAYRRIAMANSKEQLEEIVKDWTDRYGTIPSPVRQLLQVIELKQIGKSLGFS
RIKVEGKQNVVLETPMEEPAWKLLQENLPNHLRSRFVYSPKKVTVRGLGILKPQQQLENL
IEWLGKMKGALPEEKIGD
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgactctttcttctctaattcgcaatctccaaaaatctcccctaacaaaagaactatta
gaaaaattaaataaaacaggttcgttaggattaaagggtgttcctcgactcccgaaaggg
ctagtatcttcagctttagcgcaatctctagataacaatttattggtgatttgtgccact
cttgaagaagcgggaagatgggcagcccaattagagatgatgggatggaaaagtgttaat
ttttatcctacctcagaagcgtctccctacgaagcatttaacccagaatcagagatgatt
tggggacaaatgcaagtcctatctattctcaattctcaacagaatgggttagcgattgtt
accacagaaaaagccttacaaccccatttacctccctcgactgtttttgaaacgtactgt
tttaatttacaaataggaatcactaaaacgtcccaagaaattgatgaaacattagtcagg
ttaggctatgaaagggttgctttggtggaaactgaaggacagtggagtagacgaggagat
attgtcgatatttttcctgtttcttcagagttacctattcgcttagaatggttcggagat
gcattagaaaaaattcgagaattagatcctgcaacacagcgttctttagataaacttgag
caagttattttaactcctaccagttttaatccgattattgctaatacgcttaaaaacaaa
aatattaacttacaaaattatttatcagatgaagaaaaagaaggattagataatgctaat
ttccccgaaggaatggcaaggttattaggaattgcctttgaacaacctgcttcattatta
gattatttacgcgagaataccctatgtgtttttgatgaagtcgaacagtgtcaatcccat
agcgatcgctggttagactatgtagaagataattggcaagaattagatcctcctttacct
aaaattcatcgtccgtttagtgagtcattaaaattagctaaaaagtttccgattttatac
ctatctgaactatcagaagtaaccgataagaatgccttagatttatcgagtcgtcctatt
cctaccactcctcatcaattcgctaaaatcgctgaaatcttacgaggaaaacgagaaatt
tatagcggtattaccttaaataaatattcaacttggttaatttccgcccaacccactcga
accgtttctttgttagaagaacatgactgtcccgcgcaatttattcctaacaaaaaagac
tatccagggattgaaaaatgccatattcaagggacagccgttgctttaaaatattcagga
gtagctgaattagaagggtttattttaccaacttttcgcattgttgttatcaccgataga
gagttttttggacagcacgttttagccccttctgggtatattcgcaaacgacgacgcgct
gcttctaaacaagttgatttaaaccaacttaatccaggagattatgttattcataaaaac
catggacttggtaaatttttaaaactcgaaagtttagcaactcgtgagtatttagtcatt
caatatgaagatggattattaagggttccagccgattcttttgatagtttatcccgctat
cgacacacaggaagtcacccccccgaactgcataaaatgacgggtaaaatttgggaaaaa
acaaaacaaagagtccgtaaaagcatcaaaaaactagccgttgatttgctaaatttgtat
gctaaacgagccaaaaaagaaggctttatttatcctcctgataccccttggcaagaggaa
ttagaagactcttttccctatcaacccactcccgatcaattaaaagcggttcaagatgta
aaaatggacttagaaagcgatcgccccatggatcgattagtgtgtggggatgtcgggttt
ggcaaaacagaagttgctgtgagggctatttttaaagccgttaccagtggacataaacaa
gtcgctttacttgccccgacaaccattttaacccaacaacattatcataccctgaaagaa
cgatttgccccctatccaattaatattggcttattaaatcgctttaggacaacctcagaa
aaaaaggatattgtccaacgcttagcaacgggagaattagacattgttgtaggaacccat
caactcttaggacaaagtgtgaaatttaaaaatttaggcttattagttatcgatgaagaa
caacgatttggggttaaccaaaaagagaaaataaaagtcctaaaaacagaagttgatgtc
cttactttaactgcaactcccattcctcgaaccctctatatgtcgctttctggtattcga
gaaattagcttaattactacccctcccccatcccgtcgtcccatcaaaacccacctttcg
agttataatcctgacgtagtgagaaccgctattcgtaacgaattagatcggggaggacag
atattttatgttgttcccagagttgaaggaattgaagaagtcgccggacaaattcaacaa
atggttcccagtgctagaattgtgattgcccatggtcaaatggatgttaatgacctagaa
atgaccatgctaggttttaataatggcgaagctgatatcctcgtttgtactacgattatt
gaatcaggattagacattcctagagttaatactattatcgtcgaagatgcccaaaaattt
ggcttatcccaactgtatcaattaagaggaagagtggggcgatcggggatacaagctcat
gcttggttattatatcccaacaaaggacaactaagcgaaacggcaaggcaaagattgagg
gcattacaagaatttagtcaactcggttcagggtatcaattagctacccgtgacatggaa
attcggggagttggtaacttattgggggctgaacaatcaggacaaatgatggctattggg
tttgaattgtatatggaaatgttacaagaagccatcaaagaaattcaaggacaagaaatt
cctaaagttgatgaaacccaaatagatttacagctaactgcctttattccgtccgattat
attccagatttacaacaaaaaatggatgcttatcgaagaattgccatggctaattctaaa
gagcaattagaggaaattgttaaagattggactgatagatacggaacgattccttcccct
gttagacaacttttacaagtgatagagttgaaacaaattggtaaatctttaggtttttct
cgcattaaagtcgaaggaaaacaaaacgttgttttagaaaccccaatggaagaacctgct
tggaaattattacaagaaaatttacccaatcatctgcgatcgcgttttgtttatagtcct
aaaaaagtaaccgttaggggattaggaattcttaaacctcagcaacaattagaaaactta
attgagtggttaggtaagatgaaaggggctctaccggaggagaaaataggggattga
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