KEGG   PATHWAY: cyt00020
Entry
cyt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Crocosphaera subtropica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cyt00020  Citrate cycle (TCA cycle)
cyt00020

Module
cyt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cyt00020]
cyt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cyt00020]
cyt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cyt00020]
Other DBs
GO: 0006099
Organism
Crocosphaera subtropica [GN:cyt]
Gene
cce_1900  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
cce_3280  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
cce_3202  icd; isocitrate dehydrogenase (NADP+) [KO:K00031] [EC:1.1.1.42]
cce_0735  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
cce_2358  sucD; putative succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
cce_2357  sucC; putative succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
cce_0663  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
cce_3244  sdhB; succinate dehydrogenase iron-sulphur protein subunit [KO:K00240] [EC:1.3.5.1]
cce_3228  heterodisulfide reductase, subunit B [KO:K00241]
cce_0396  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
cce_1850  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
cce_0508  putative phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
cce_0292  pdhA; pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
cce_4647  pdhB; pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
cce_2750  pdhC; pyruvate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
cce_0953  nifJ; pyruvate oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cyt00010  Glycolysis / Gluconeogenesis
cyt00053  Ascorbate and aldarate metabolism
cyt00061  Fatty acid biosynthesis
cyt00071  Fatty acid degradation
cyt00190  Oxidative phosphorylation
cyt00220  Arginine biosynthesis
cyt00250  Alanine, aspartate and glutamate metabolism
cyt00280  Valine, leucine and isoleucine degradation
cyt00350  Tyrosine metabolism
cyt00470  D-Amino acid metabolism
cyt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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