Crocosphaera subtropica: cce_3710
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Entry
cce_3710 CDS
T00686
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cyt
Crocosphaera subtropica
Pathway
cyt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cyt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
cce_3710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cyt03400
]
cce_3710
Enzymes [BR:
cyt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
cce_3710
DNA repair and recombination proteins [BR:
cyt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
cce_3710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ACB53058
CyanoBase:
cce_3710
UniProt:
B1X1M8
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All DBs
Position
3839248..3842727
Genome browser
AA seq
1159 aa
AA seq
DB search
MVFSSLINTLQKSPLTKELLDKLKGNNELGLKGINRLPKGLISSALAQANQQNLLVICAT
LEEAGRWTAQLEIMGWKTVNFYPTTEASPYEPFNPESEMIWGQMQVLSNLNISENNNNNY
AIVTTEKALQPHLPPPDIFHTHCLKLQAGMTEKSKKFDEGLVKLGYERVNLVEVEGQWSR
RGDIVDIFPVSSEVPIRLEWFGDELEKIREFDPATQRSLDSIENILLTPISFNTIIANTI
KENNNNLDDYLSEEETEDLKNYNYPPGMQRFLGLAFDEPACILDYLSPNTLCVFDEIEQC
ESHSDRWLDYIEENWQDQEKNLPKIHRSFNDSFQLTQELPKLYLSELSEVNNTNALDLSS
RPLPTTPHQFAKLAEILRGKREIYSGITLDKYATWLISAQPSRTVSLLQEHDCPAQFIPN
PRDYPAINKSHIQGTAIALKYSGLAELEGFILPTFRIVVVTDKEFFGQHVLATAGYIRKR
RRATSKKVDLQQLHPGDYVVHKSHGIGKFLKLESLATREYLVVQYADGILRIPADSFDSL
SRYRHTGSTPPQLHKMTGKTWQKSKQKVRKNIKKLAVDLINLYAKRAKNTGFTYPLDTPW
QQELEDSFPYQPTPDQLKAIQDVKIDLESDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSG
HKQVAFLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTTSEKKEIIQRLATGELDIVV
GTQQLLGKSVKFKDLGLLVVDEEQRFGVNQKEKIKEIKSHVDVLTLTATPIPRTLYMSLS
GIREMSLITTPPPSRRPIKTHLSRYNPDVVRTAIRNELDRGGQVFYVVPRVEGIEEVAAQ
IKTMVPSARMAIAHGQMDVNELEITMLSFNNGDADILVCTTIVESGLDIPRVNTIIVEDA
QKFGLAQLYQLRGRVGRSGIQAHAWLLYPSKAQLTETARQRLRALQEFSQLGSGYQLATR
DMEIRGVGNLLGAEQSGQMESIGFELYMEMLQEAIREIQGQEIPKVEDTQIDLQLTAFIP
TEYIPDMEQKMSAYRGIAVANSKKELAQIAAEWNDRYGNLPVPVEQLLQVMELKQLAKSL
GFSRIKPEGKQHIVLETPMEEPAWKLLQEKLPEHLRSRFVYTPKKVTVRGLGVMKPQKQL
ESLIEWFGRMQDAIINGEQ
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggttttctcttcactaattaatacattacaaaaatcccccttaactaaggaactttta
gacaaactcaaaggaaataatgaattaggattaaaaggaattaatcgattaccaaaaggg
ttaatttcttcagctttagctcaagctaaccaacaaaacctattagtcatttgtgctacc
ttagaagaagccggaagatggacagcacaactggaaattatggggtggaaaacagtgaat
ttctacccgacgactgaagcctctccctacgaaccatttaatcctgaatcagaaatgatt
tggggacaaatgcaggtattatctaatcttaatatatcagaaaataataataataactat
gctattgttactacagaaaaagccttacaaccccatttaccaccccctgatattttccat
acccactgcttaaaattacaagcaggaatgacagaaaaatctaaaaaatttgacgaaggt
ttagttaaattagggtacgaaagagttaatttagtcgaagtcgaaggtcagtggagtcgc
cgaggtgatattgttgatatctttcccgtttcttcagaagttcctataagattagaatgg
tttggagacgaattagaaaaaatcagagaatttgatcctgctactcagcgatcgcttgat
tctatagaaaatatattgttaactcccattagctttaataccattattgctaacactatt
aaagagaataataataacctagatgattatttatctgaagaagaaacagaagacttaaaa
aactataattatcccccaggaatgcagcgatttttaggactagcatttgatgaaccagct
tgcattttagactatttatcccccaatacgctctgtgttttcgatgaaattgaacaatgt
gaatcccatagcgatcgctggttagactatatagaagaaaattggcaagatcaggaaaaa
aacttacccaaaattcacagaagttttaatgattcttttcaattaacgcaagaattgcct
aaattatatctctcggaactgtcagaagttaacaatacaaatgccttagatttatccagt
cgtcccctaccaaccactccccatcaatttgctaaactcgcagaaatattaaggggaaaa
cgagaaatttatagtggtattaccttggataaatatgccacttggttgatttctgctcaa
ccttctcgtactgtctctctattacaagaacacgattgtccagcgcaatttattcctaat
ccccgtgattatccagctattaataaatcccatatccaaggaacagcgatcgctctaaaa
tattcagggttagcagaactagaaggctttattttaccgacctttcgcattgttgttgtt
accgataaagaattttttggacagcacgttttagccactgcaggatacattagaaagcgt
cgtcgtgctacatctaaaaaagttgatttacaacaactgcatcctggggattatgtggtt
cataaaagtcacggaattggtaaatttttgaagttagaaagtttagcaacccgtgaatat
ttagtggtacaatacgccgatggcattttaagaattccggctgattcctttgatagttta
tcccgttaccgtcatactggttcaacccctccccaactccataaaatgacggggaaaacc
tggcagaaatcgaagcaaaaagtccgtaaaaatattaaaaaattagccgttgatctcatc
aatttgtacgcaaaacgagcaaaaaatacagggtttacttatccccttgacaccccttgg
cagcaagaattagaagactcttttccctatcaacccacccctgatcaactgaaagccata
caagacgttaaaatagacttagaaagcgatcgcccgatggatcggttagtgtgtggtgac
gtggggtttgggaagacagaagtagccgttagagccatttttaaagccgttaccagtggt
cataaacaagtggcatttttagcccctaccaccatcttaacccaacaacattatcatacc
ttaaaagaacgatttgctccctatcctattaatattggactattaaatagatttcgcaca
acctcagaaaaaaaagagattatccaacgcttagctacaggagaattagatatagtagta
ggaacacaacaactcttaggaaaaagcgttaaattcaaagacttaggcttattggtagtg
gatgaagaacaacgatttggtgttaatcaaaaagagaagattaaagagataaaaagccat
gtggatgttcttactttgaccgcaacacccattccccgaaccttatatatgtccctatca
ggaatacgggaaatgagcttaattacgacacctccgccctctcgtcgtcctattaaaacc
catttatctcgttataatcctgatgtagtaagaaccgctattcgtaatgaattagatcga
gggggacaagttttttatgtggttcctagagtcgaaggaattgaagaagttgcagcccaa
ataaaaacgatggttcctagtgcaagaatggctattgctcacggacaaatggatgttaac
gaattagaaataactatgttaagttttaacaatggagatgcagatattctggtttgtacc
actattgttgagtctgggttagacattcctagggttaatacaattattgtagaagatgct
cagaaatttgggttagcccaactgtatcaactgagaggaagagtcggccgatctggtatt
caagcacacgcttggttattgtatcctagtaaagctcaactaacagaaacagccaggcaa
agattaagagcattacaggaatttagtcagctaggatcaggctatcaattagctactcgt
gacatggaaattcgaggggttggtaacttattgggagccgaacaatcgggacaaatggag
tccattggctttgaattatatatggagatgttacaagaagccatccgagaaattcaaggc
caagaaataccaaaagtagaagatacccaaattgacttacaattaactgcctttattccg
acggaatatattcccgatatggaacaaaaaatgtcggcttaccgtggaattgcggttgct
aactctaagaaagaattagcccaaattgcagcagaatggaatgatcgctatggaaattta
cctgttccagttgaacaattattgcaagtaatggaactcaaacaattagccaaatctttg
ggcttttctcgtattaaacccgaaggaaaacaacacatcgtcttagaaacgccgatggaa
gaaccggcttggaaactattacaagaaaaattacccgaacatttgcgatcgaggtttgtt
tatacccctaaaaaagtgactgtcagggggttaggagttatgaaaccccaaaaacaacta
gaaagcttaatagaatggttcggaaggatgcaagatgcgattataaacggtgaacagtag
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