Cycloclasticus sp. PY97N: CPC19_05385
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Entry
CPC19_05385 CDS
T05126
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cyy
Cycloclasticus sp. PY97N
Pathway
cyy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPC19_05385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyy03019
]
CPC19_05385
03009 Ribosome biogenesis [BR:
cyy03009
]
CPC19_05385
Enzymes [BR:
cyy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CPC19_05385
Messenger RNA biogenesis [BR:
cyy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CPC19_05385
Ribosome biogenesis [BR:
cyy03009
]
Prokaryotic type
rRNA helicases
CPC19_05385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Transketolase_C
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ATI02919
LinkDB
All DBs
Position
complement(1076673..1078457)
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AA seq
594 aa
AA seq
DB search
MTSQPTLGFADLALSTPVMDALKRIGYEQPSPIQAEAIPHLLDGHDLIGTAQTGTGKTAA
FALPLLSKIDLTVSGPQVLVLAPTRELAIQVAEAFKTYASSMKGFNVLPIYGGQAMDTQL
RQLRRGVHVVVGTPGRVMDHLRRKTLKLDNLKTIVLDEGDEMLRMGFIEDVEWILEQTPE
QRQVALFSATMPAPIRRVADKYLSSPKVVKIISKTSTVERIEQRFWMVSGLHKLDALTRI
LEVEDFDGIIMFVRTKALTVELAEKLEARGYSASAINGDMTQALRERTIGQLKKGQIDIL
VATDVAARGIDVARISHVVNYDIPYDTEAYVHRIGRTGRAGRTGKAILFVAPRERRLLRA
IENATRQPIKPMELPTRQQVNEKRANDFKATLTQVMSNKKLDFFHQLIQSYIEEHDADPI
QLAGALAYLAQKDKPLMLEESSKKSSAKEGKSPRQDASIKGERRSKSLRPDKDDLPKSKR
GNPKVPMDNYRIEVGKNHNVMPGDIVGAIANEADVEPRHIGHIELNEDHSYIELPVGMPK
IVFQSLKKIRVRNQPLNIERTDHVAKPAATSAKPAKGKKKTYTKKPKKKKTKSF
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgacatcccaacctaccttaggcttcgctgacttagcgttgtctactcctgtaatggac
gctctaaaacgcatcggttacgaacaaccctctcctattcaagctgaagcaataccacat
ttgctagatggccatgatttaattggtacagcacaaacaggtactggtaaaacagccgca
tttgctttaccccttttatcaaaaattgacttaacagtcagcggcccgcaagtattagtg
ctagcacccacacgtgaactagccattcaagttgctgaggcatttaaaacctatgctagc
tcaatgaagggcttcaatgtgttgccaatttatggcggccaagcgatggatacccaatta
aggcaactgcgccgcggcgtacacgttgttgttggtacaccaggccgtgtaatggatcat
ttacgccgtaagacgttaaaactagataacctaaaaaccatcgtcttagatgagggcgat
gaaatgctaagaatgggttttattgaagatgtagagtggattttagaacaaacaccagag
caacgacaggttgccctattctctgcaaccatgcctgcccccattcgacgtgttgccgac
aaatatctaagctcaccaaaagtcgttaaaattatttctaaaacatcaaccgttgaacgc
attgagcaacgtttttggatggttagcggcttacataaactagatgctttaacgcgaatc
cttgaggttgaagactttgacggcattattatgtttgtccgcacaaaagcattgaccgta
gagttagctgaaaaactcgaagcccgtggctattccgcctcggctattaatggtgatatg
acccaagcgcttcgtgaacgaaccattggtcaattgaaaaaaggtcaaattgacattctg
gttgccaccgatgtcgcggcccgcggcatcgatgttgcccgtatcagccatgttgtgaac
tatgacatcccttatgatacagaagcctatgttcaccgtattgggcgtactggtcgcgca
ggtagaacaggcaaggcgattttatttgttgcaccacgcgaacgtcgcctactacgtgct
attgaaaacgctacccgtcagccaatcaaacccatggagttaccaactcgccaacaagtt
aatgaaaaacgagctaacgactttaaagcaacactgacacaagtgatgtcgaataagaaa
ttagattttttccaccagcttattcagtcctatatagaagaacacgatgctgacccgatt
caactagcaggggcattggcctatttggctcaaaaagacaaaccattgatgcttgaggaa
tcctctaaaaaatcatcagccaaagaagggaaaagccctcgtcaagacgcctcaattaaa
ggcgaaagaagaagcaaatcattgcgcccagataaagatgatttacccaaaagtaaacgt
ggcaaccccaaagtgccgatggacaactaccgcattgaagttggaaaaaaccacaatgtt
atgccgggtgatattgttggcgccattgccaacgaagcagatgttgaaccaagacacatc
ggccatatagagctcaatgaagaccacagttatattgaattgcccgttggcatgccaaaa
attgtttttcaaagcctgaaaaaaattcgcgttcgaaatcagccgcttaatatcgagcga
accgatcatgtagcaaagcctgccgcaacctcggcgaaacccgctaaaggtaagaaaaaa
acgtacactaaaaaacctaaaaagaaaaaaaccaagtcgttttaa
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