Clavibacter zhangzhiyongii: H9X71_11440
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Entry
H9X71_11440 CDS
T07408
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
czh
Clavibacter zhangzhiyongii
Pathway
czh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
czh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H9X71_11440 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
czh03400
]
H9X71_11440 (mfd)
Enzymes [BR:
czh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H9X71_11440 (mfd)
DNA repair and recombination proteins [BR:
czh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H9X71_11440 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
MFD_D3
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QOD43210
UniProt:
A0A7L7Z0F5
LinkDB
All DBs
Position
complement(2430433..2434065)
Genome browser
AA seq
1210 aa
AA seq
DB search
MILQGLIPALSRASTFDDALASASRDADFSLTEGLQGPLLAGLLRQRIQRGIPGCLLVVT
ATGRESEGMRRSLDAVLPDAEILEFPAWETLPHERLSPSAEIVGKRIHALRRMEAWHAAL
GAGAREVPAAEVRPLVIVASVRAALQPVADNLTELAPVQLTTGSRGHDLSELAVRLVDLA
YSRVDMVTRRGEFAVRGGILDVFPPVSDHPVRVEFFGDEVDQMRPFAVADQRSLEETVDS
VELPPSRELLLSAPVRQRAREMQHEFPNLQQMLAKIAEGIPVEGMESLAPALVDKLVPVT
HYLPVDAAIAVVSPERVSTRAQSLADTNREFLDAAWNAATAGAQAPIDLASGDFLSLGRL
RDARGPRRWWTLSGFQATDVLPEDLGIDEVMTVRIEADPVPSFAGNADGAIEHVRERLAA
GWSVGVVAQGSGLVERADTVLREAGVPARVVEEFPAEPEAGVAYLLRAAIDAGFEMPEIQ
LALLTESEFYGRAAGYDSRQVKKLATRRKNVVDPLQLKPGDHVVHTTHGIGKFVELTQRE
VSSGGRNAVKTRREYLVIEYAPSKRGYPGDKLFVPTDQLDLLSRYVGGEEPALSKMGGSD
WAAAKGKARRAVRDIAVELVKLYSARMASRGHSFPPDTPWQRELEEAFPFMETPDQLTVI
DEVKRDMESPIPMDRLVSGDVGFGKTEIAVRAAFKAVQDGKQVVMLVPTTLLVKQHFETF
SERFAGFPVHLRQLSRFQTDKESRETIKGLEDGSVDVVIGTHRLLTGSIAFKDVGLVIID
EEQRFGVEHKDALKKLKANVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTF
VGPNSEKQIAAAIRRELLREGQVFFVHNRVSSINRVASELAELVPEARVAVAHGKMSEAM
LEQVIVDFWERKFDVLVSTTIIETGLDIANANTLIIDRADKYGLSQLHQLRGRVGRGRER
AYAYFLYDADKPLSETAHDRLSTIAANNELGSGMQVALKDLEIRGAGNLLGGEQSGHIQG
VGFDLYLRMIGEAVSTFRGDVAEGQTELRLELPVDAHIPEEYVDSERLRLEAYQKLSTAA
SPTATDDQIDRVIEELSDRYGEPPVEVDNLVRVSRLRRVAQRAGLSEVVAMGPNLRIAPA
DLADSKQVRLQRMYPGSRLFAQTNAVTVPLPKRDGEPLPDAELVDWVRQLLDAVFTVEPA
PAAKESAPKA
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
gtgatcctccagggcttgatcccggcgctctcgcgcgcctccacgttcgacgacgccctc
gcatcggcctcccgcgacgccgacttctccctcaccgaggggctccaggggccgctgctc
gcggggctcctccgccagcgcatccagcgcggcatcccggggtgcctgctcgtcgtcacc
gccaccggccgcgagtccgagggcatgcgccgcagcctcgacgccgtgctgccggacgcc
gagatcctcgagttcccggcctgggagacgctgccgcacgagcggctgagcccgagcgcc
gagatcgtcggcaagcggatccacgccctccgccgcatggaggcgtggcacgccgcgctc
ggggcgggggcccgcgaggtgccggccgccgaggtccgtccgctcgtcatcgtcgcctcc
gtgcgcgcggccctgcagcccgtcgccgacaacctcaccgagctcgcgcccgtgcagctc
accaccggcagccgcggccacgacctgtccgagctcgccgtgcggctcgtcgacctcgcg
tactcgcgcgtcgacatggtcacgcgccgcggcgagttcgcggtgcgcggcggcatcctc
gacgtcttcccgccggtctccgaccaccccgtgcgcgtcgagttcttcggcgacgaggtc
gaccagatgcgcccgttcgcggtcgccgaccagcgctcgctcgaggagacggtcgactcc
gtcgagctgccgccgagccgggagctgctgctgagcgcgcccgtgcgccagcgcgcccgc
gagatgcagcacgagttcccgaacctgcagcagatgctcgccaagatcgccgagggcatc
ccggtggagggcatggagtcgctcgcgccggcgctcgtcgacaagctggtccccgtcacg
cactacctgccggtcgacgcggccatcgccgtcgtctcgcccgagcgggtgtccacccgc
gcgcagagcctcgccgacacgaaccgcgagttcctcgacgccgcgtggaacgccgccacc
gcgggcgcgcaggcgcccatcgacctcgcatccggcgacttcctctcgctcggccgcctg
cgcgacgcccgcggcccgcgccgctggtggaccctgtccggcttccaggccaccgacgtg
ctgccggaggacctggggatcgacgaggtcatgaccgtccgcatcgaggcggatcccgtg
ccgagcttcgcgggcaacgccgacggcgccatcgagcacgtgcgcgagcgcctcgcggcc
ggctggagcgtgggcgtcgtcgcccagggatccggcctcgtcgagcgcgccgacaccgtc
ctccgcgaggcgggcgtgcccgcgcgcgtggtcgaggagttccccgcggagcccgaggcg
ggcgtcgcctacctcctgcgcgccgcgatcgacgcgggcttcgagatgcccgagatccag
ctcgcgctcctcaccgagagcgagttctacggccgcgccgccggctacgacagccgccag
gtcaagaagctcgccacgcgccgcaagaacgtggtggacccgcttcagctgaagccgggc
gaccacgtcgtgcacaccacgcacggcatcggcaagttcgtcgagctcacgcagcgcgag
gtctcgtccggcggccgcaacgccgtgaagacccgtcgcgagtacctcgtcatcgagtac
gcgccctcgaagcgcggctacccgggcgacaagctcttcgtgcccaccgaccagctcgac
ctgctcagccgctacgtcggcggcgaggagccggccctcagcaagatgggcggcagcgac
tgggccgccgccaagggcaaggcccgccgagccgtccgcgacatcgccgtcgagctcgtg
aagctgtactccgcgcgcatggcgtcgcgcgggcactccttcccgccggacaccccgtgg
cagcgcgagctcgaggaggcgttccccttcatggagacgcccgaccagctcaccgtcatc
gacgaggtcaagcgcgacatggagagccccatccccatggaccgcctggtctcgggcgac
gtcggcttcggcaagacggagatcgccgtgcgcgccgcgttcaaggccgtgcaggacggc
aagcaggtcgtgatgctcgtgcccacgacgctcctcgtgaagcagcacttcgagacgttc
tccgagcgcttcgccgggttccccgtgcacctgcgtcagctcagccgattccagaccgac
aaggagtcgcgcgagaccatcaaggggctcgaggacggctcggtcgacgtcgtcatcggc
acgcaccggctgctcacgggcagcatcgcgttcaaggacgtggggctcgtcatcatcgac
gaggagcagcggttcggcgtcgagcacaaggacgcgctgaagaagctgaaggccaacgtg
gacatcctcgcgatgtcggccacgcccatcccgcgcacgctcgagatggcggtcacgggc
atccgcgagatgtccacgctcgccaccccgccggaggaccggcacccgatcctcacgttc
gtgggccccaacagcgagaagcagatcgccgcggcgatccgccgcgagctgctgcgcgag
ggccaggtcttcttcgtgcacaaccgcgtctcgagcatcaaccgcgtggcgtcggagctg
gcggagctggtgcccgaggcgcgcgtcgccgtggcccacggcaagatgagcgaggcgatg
ctggagcaggtcatcgtcgacttctgggagcggaagttcgacgtgctcgtctcgaccacc
atcatcgagaccggcctcgacatcgccaacgcgaacacgctcatcatcgaccgggccgac
aagtacggcctcagccagctgcaccagctgcgcggccgcgtcggccgtggccgggagcgc
gcgtacgcgtacttcctctacgacgccgacaagccgctgtccgagacggcgcacgaccgg
ctgtccacgatcgcggcgaacaacgagctgggctcgggcatgcaggtcgcgctcaaggac
ctcgagatccgcggcgccggcaacctgctgggcggcgagcagtcgggccacatccagggc
gtcggcttcgacctctacctgcggatgatcggcgaggccgtctccaccttccgcggcgac
gtcgcggagggccagaccgagctgcggctcgagctgccggtcgacgcgcacatccccgag
gagtacgtcgacagcgagcggctgcgcctcgaggcgtaccagaagctctcgacggcggcc
tcgcccacggccaccgacgaccagatcgaccgggtcatcgaggagctgtcggaccgctac
ggcgagccgcccgtggaggtcgacaacctcgtgcgggtgtcgcgcctgcgccgggtcgcg
cagcgggccgggctcagcgaggtcgtcgccatggggccgaacctgcgcatcgcgccggcc
gacctcgccgacagcaagcaggtgcgcctgcagcgcatgtacccgggcagccgcctgttc
gcgcagaccaacgcggtcaccgtgcccctgcccaagcgcgacggcgagccgctgcccgac
gccgagctcgtcgactgggtgcggcagctcctcgacgccgtgttcacggtggagccggcg
ccggccgcgaaggagtccgcgccgaaggcgtga
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