Frigidibacter mobilis: AKL17_3157
Help
Entry
AKL17_3157 CDS
T04387
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
daa
Frigidibacter mobilis
Pathway
daa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
daa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AKL17_3157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
daa03400
]
AKL17_3157
Enzymes [BR:
daa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AKL17_3157
DNA repair and recombination proteins [BR:
daa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AKL17_3157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AMY70389
UniProt:
A0A165SRM4
LinkDB
All DBs
Position
complement(3140323..3142761)
Genome browser
AA seq
812 aa
AA seq
DB search
MGLLDTYHGKRDFGQTPEPADPGQSSATALRYSMQKHDATRLHWDLRLEWQGVLLSWAVT
RGPSADPSSKRLAVRTEDHPLSYLTFEGVIPKDNYGAGTVMLWDIGHWQPFHDVADGLAE
GHLHFALHGRRNTGNWSLVRMKGRRAGDKGRETWLMVKDRDAAAEDAQEGLVERHLTSVA
TGRDLAGVAAGAPAVAFGPDRKGAMPRFRAPQLATAVKDLPEGAAWLHEVKHDGYRAQVA
IGRGGARIFTRSGLDWSDRFSPLLPVLAELPAGTALIDGEIVAGAGLQGFAALQAAIQEG
GPFRFYVFDLLHLNGADLAPLPQTERRAALEKLLEDVPARGLVQLSPAIEGEAAPVLAAI
CEAGGEGIISKLAHAPWRGGRSTAWLKVKCSRRAEFVICGYQPSDKRGRAFASLLLATRE
GDTLVYRGKVGTGFDDAAQQEIAERLAALARPKTPLEKVPAEGRGAKWVRPELVAEVVYA
EVTPEGRLRHARFIALREDKPAVEVQMETEIPAGDRTLVRGTPISSPDRVIFPKPKTTKL
DLARYYDAMADRILPTLADRPASLLRLPSGLEGERFFQKHAGKGFPKAIRSLPIEEKDGG
TEQYIYIADAEGLVAAAQMGTVEFHPWGARRDRLDRPERLVFDLDPDEGLGFAAVRRAAF
DLRGKLEELGLGSWPMVSGGKGVHVIVPLRRTAGWDTVKLFAQLFATLLASGQPDRYTAT
MAKAARKGRIFIDWLRNERGATAIAPFSVRARPGAPVAVPVSWDELARLRRANGFGLKAA
QERAWSDLTLPADATLGEPVLARLEALREKQA
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgctggacacatatcacggcaagcgcgatttcgggcagacgccggaaccggcc
gaccccggccagtccagtgcgaccgccctgcgctattcgatgcagaagcatgacgcgacc
cgcctgcattgggatctgcggctggaatggcagggcgttctgctgagttgggctgtcacc
cgcggcccctctgccgatccgtccagcaagcggctggcggtgcggacggaggaccacccg
ctgagctacctgaccttcgaaggagtgatcccgaaggacaattacggcgcggggacggta
atgctgtgggatatcggccattggcagcctttccacgatgtggccgacggcctggccgaa
ggccatctgcatttcgcgctgcacggccggcgcaacaccggcaactggtcgctggtgcgg
atgaaggggcggcgggcgggtgacaagggccgcgagacctggctgatggtcaaggaccgc
gatgccgccgccgaagacgcgcaggaggggctggtggagcggcacctgaccagcgttgcc
accgggcgcgatctggcgggggtcgcggccggcgcccccgccgttgcctttgggccagat
cgcaagggcgcgatgccgcggttccgcgcgccgcaattggccaccgcggtgaaggacctg
cccgagggcgcggcctggctgcatgaggtcaagcatgacggctaccgcgcgcaggtggcg
atcggacggggcggcgcgcggatcttcacccgcagcgggctcgactggtccgaccgcttc
tcgccgctgctgccggtgctggccgaactgcccgccgggaccgcgctgatcgacggcgag
atcgtcgcgggtgcggggttgcagggctttgccgcgctgcaggctgccattcaggagggc
gggccgttccgcttctatgtcttcgacctgttgcatctgaatggcgccgaccttgcgccg
ctgccgcaaaccgagcgccgcgctgcgctggagaagttgctggaggacgtgcccgcccgc
ggcctcgtgcaactgtcgccggccatcgagggcgaggccgcgccggtgctggcggcgatc
tgcgaggcgggcggcgaggggatcatctccaaactcgcccatgcgccgtggcgcgggggg
cgatccaccgcctggctgaaggtgaagtgcagccgccgggcagagttcgtgatctgcggc
tatcaacccagcgacaagcggggtcgggcctttgcctcgctgttgctggcgacgcgggaa
ggcgacacactggtctatcgcggcaaggtcggcaccggcttcgacgatgcggcgcaacag
gagatcgcggagcggctggcggcgctggcccggccgaaaaccccgctggagaaggtaccg
gccgaggggcggggcgcgaagtgggttcggcccgaactggtggcagaggtggtctatgcc
gaggtgacacccgaaggccgcctgcgccacgcgcggttcatcgcgctgcgtgaagacaaa
ccggcagtggaggtgcagatggaaaccgaaatccccgcgggcgaccgcacccttgtgcgc
ggcaccccgatcagcagcccggaccgggtgatctttcccaagccgaagacgaccaagctc
gaccttgcccgctactatgacgcgatggcggaccggatcctgccgacgctggcggatcgg
cccgcctcgctgctgcggctgccaagcgggctggagggcgagcggttcttccagaaacac
gcgggcaagggctttccgaaggcgatccgcagcctgcccatcgaggagaaggatggcggg
accgagcaatacatctacatcgccgatgccgaggggctggtggccgcggcgcagatgggc
acggtggagttccacccctggggcgcgcgccgtgaccggctcgaccggcccgaacggctg
gtgttcgatctggaccccgacgaggggttgggatttgccgccgtgcgtcgcgcggcgttc
gatctgcggggcaagctggaggagttggggcttggttcctggccgatggtgtcgggcggc
aagggcgtgcatgtgatcgtgccgctgcgccgtacggcgggctgggacacggtcaagctg
ttcgcgcagctcttcgccacgctgctggcgagcggccagcccgaccgctacaccgcaacg
atggccaaggcggcgcgcaaggggcggatcttcatcgactggctgcgcaacgaacgcggg
gcgacggcgattgcccccttctcggtgcgcgcccgccccggtgcgccggtggcggtgccg
gtcagctgggacgaactggccaggctgcgccgtgcgaacggcttcggcctgaaggcggcg
caggagcgggcatggtcggacctgaccctgcccgccgatgccacgctgggggagccggtg
ctggcccggctggaggcgctgcgtgagaagcaggcctga
DBGET
integrated database retrieval system