Frigidibacter mobilis: AKL17_4143
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Entry
AKL17_4143 CDS
T04387
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
daa
Frigidibacter mobilis
Pathway
daa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
daa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AKL17_4143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
daa03019
]
AKL17_4143
03016 Transfer RNA biogenesis [BR:
daa03016
]
AKL17_4143
Enzymes [BR:
daa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AKL17_4143
Messenger RNA biogenesis [BR:
daa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AKL17_4143
Transfer RNA biogenesis [BR:
daa03016
]
Prokaryotic type
tRNA degradation factors
AKL17_4143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
MarR_2
Motif
Other DBs
NCBI-ProteinID:
AMY71359
UniProt:
A0A161H0D2
LinkDB
All DBs
Position
complement(4116014..4118275)
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AA seq
753 aa
AA seq
DB search
MAQIPSKQEILDWIADHPGAAAKRDIAKAFDIKGAERIELKRILKEMEAEGSLERRRSSY
RDADKLPPVTILTVLPPDADGDQFARPMEWEGKGAAPRVLFVPRKGDAPVAAGDRILAKL
IEVGAEDHDYQARLIRPIGVVAHKVLGIFRKGAEGGRIVPIDKGSDKEWRVSRDATLDAQ
DGELVEAEQAGPRARLGLPQARVIERLGDPSAPKAVSLIAIHQHGIPDDFPDEVIRLSDA
MEPAGLGDREDLRDMPLVTIDPVDARDHDDACYAEADDDPKNPGGHIIWVAIADVAHFVT
PQSPIDREARLRGNSSYFPDRVVPMLPDHLSGDLCSLHEGLNRPCIAVRMKVDAEGRKIS
HRFVRGLMKSVASLIYDEVQEAQDGNPNARCAELLDDVIRPLYAAYGALKAARAKRQPLD
LDLPERKIVLTDDGKVASVNYRERFDAHRLIEEFMILANVAAAEELERLRRPLLYRVHEE
PSPQKLEALREVAQASGFTLAKGQVLQTAHLNQLLAQAQNTDFDELINITTLRSMTQAYY
HPGNFGHFGLALRSYAHFTSPIRRYSDLIVHRALISAHGWGKDGLSAQDVEMLEETAKHI
SDTERRSMAAERDTTDRYLAAFLADRVGAEFTGRVSGVTRFGLFIRLDETGADGLIPIRT
LGREFYHFDADAQTLMGSESGTLIGLGQRVTVRLSEAVPVTGGLMLELLELEGRGMPGGG
GGGKKGGRGRPRKPGAVKAREAAIKRKVLRKRR
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atggcacagataccctccaagcaagagatcctcgactggatcgccgaccatcccggcgcc
gccgccaagcgcgacatcgccaaggcctttgacatcaagggcgccgagcggatcgagctg
aagcgcatcctgaaggagatggaggccgagggctcgctggaacggcgccgcagcagctac
cgcgatgccgacaagctgccgcctgtcacgatcctgaccgtgttgccgcccgatgccgat
ggcgaccagttcgccaggccgatggagtgggagggcaagggcgccgccccgcgcgtgctg
ttcgtgccgcgcaagggcgatgcgccggtggcggcgggcgaccggatcctggccaagctg
atcgaggtgggggccgaggaccatgactatcaggcgcggttgatccggccgattggcgtg
gtggcgcataaggtgctgggcatcttccgcaagggcgccgagggcgggcggatcgtgccc
atcgacaagggatcggacaaggaatggcgggtgtcgcgcgatgcgacgctggacgcgcag
gatggcgagctggtcgaggccgagcaggccgggccgcgcgcaaggctgggcctgccgcag
gcgcgggtgatcgagcggctgggcgacccgtcggcgccgaaggcggtgtcgctgatcgcg
atccaccagcacggcattcccgatgacttccccgatgaggtgatccgcctgtcggatgcg
atggagccggcggggctgggcgaccgcgaggacctgcgcgacatgccgctggtgaccatc
gacccggtggatgcgcgcgaccatgacgatgcctgctatgccgaggcggatgacgacccg
aagaaccccggcgggcatatcatctgggtggccatcgccgatgtggcgcatttcgtgacg
ccgcaaagcccgatcgaccgcgaggcgcggctgcgcggcaattccagctatttccccgac
cgcgtggtgccgatgctgcccgaccatctgtcgggcgacctgtgctcgctgcatgagggg
ctgaaccggccctgcatcgcggtcaggatgaaggtggatgccgaagggcgcaagatcagc
caccgcttcgtgcgcgggctgatgaagtcggtcgccagcctgatctatgacgaggtgcag
gaggcgcaggacggcaatccgaacgcgcgctgcgccgagctgctggacgatgtgatccgc
ccgctttacgcggcctatggcgcgctgaaggcggcgcgggcgaaacggcagccgctggac
ctcgacctgccggagcgcaagatcgtgctgactgacgatggcaaggtcgcctcggtcaac
taccgcgagcggttcgatgcgcaccggctgatcgaggagttcatgatcctggccaatgtg
gcggcggcggaagagctggagcggctgcgccgcccgctgctctaccgcgtgcatgaggag
ccgagcccgcagaagctggaggcgctgcgcgaggttgcgcaggcgtcgggcttcacgctg
gccaaggggcaggtgctgcagaccgcgcacctgaaccagttgctcgcgcaggcacagaac
accgatttcgacgagcttatcaacatcaccacgctgcggtcgatgacgcaggcctattac
catccgggcaatttcggacatttcgggctggcgctgcgcagctatgcgcatttcacctcg
cccatccgccgctattcggacctgatcgtgcaccgggcgctgatctcggcgcatggctgg
ggcaaggacgggctgtcggcgcaggatgtggagatgctggaggagacggccaagcacatc
tccgataccgagcggcgcagcatggcggcggagcgggacacgacagaccgttacctggcg
gccttcctggcggaccgggtgggggcggagttcaccgggcgggtgtcgggcgtcacgcgg
ttcggcctgttcatccggctggatgagaccggggcggacgggctgatcccgatccgcacg
ctggggcgcgagttctatcatttcgatgccgatgcccagacgctgatgggctcggaaagc
ggcacgctgatcgggctgggccagcgggtgacggtgcgcctgtccgaggcggtgccggtc
acgggcgggctgatgctggaactgctggagctggaggggcgcgggatgccgggcggcggc
ggcggcggcaagaagggcggtcgcgggcggccacgcaagccgggggccgtgaaggcgcgc
gaggcggcgataaagcgcaaggtcctgcgcaagcggcgctag
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