Delftia acidovorans: Daci_4339
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Entry
Daci_4339 CDS
T00620
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dac
Delftia acidovorans
Pathway
dac03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Daci_4339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dac03400
]
Daci_4339
Enzymes [BR:
dac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Daci_4339
DNA repair and recombination proteins [BR:
dac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Daci_4339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ABX36970
UniProt:
A9BWY5
LinkDB
All DBs
Position
4748560..4751175
Genome browser
AA seq
871 aa
AA seq
DB search
MPATRSKFQASRQARPTNGAAKAATPQASLALYRQKRDFTRTPEPSAEPSSETIAGQPGA
GALQFVIQKHWASHLHYDFRLELDGSMKSWAVPKGPSYDPADKRMAVQVEDHPMAYNRFE
GQIPPGQYGAGKVIIWDCGTWLPEGDAAEGYRKGKLKFELRGHKLQGRWTLVRMRGKDDA
KKPAWLLIKEHDGLERAASEFNVVEDMPDSVAGLPLPTATAPVTTPVATPVTAPMPQSIA
PQLATLVDHAPADAGQWIFESKFDGYRLLARIEDGAVRLFTRNGKDWTTKMPALAHTFAA
LPLQSGWVDGEVLMLDSDSRPDFQALQNAFDGERTDHLVFFAFDLLWHDGQDLRPQPVEQ
RRQQLQALLHKAPSDRLRFSEAFDAPPADLVAAACQLGLEGVIGKRRGSAYASRRSADWI
KLKCGLRQEFVIAGYTDPQGTRTGLGALVLAVHGEDGQLRAAGKVGTGFNRRTLADLRQR
LERLATGTSPLADSRGLGSGVHWVRPTLLAEVSFAQWTEDGQVRHAVFQGLRADKPARSI
VKEEPQHVPSTASSASAAATPGAARTQTRNARAARLPASMTITHPERVIDPSTGITKMDL
ARYYATVAPFMITHLKSRPVAMVRAPDGIEGELFFQKHLDQAPLQGIAALTPELDPGHAP
LMEVSRREGLVAAAQMNTIEWHTWNARKDRIDRPDRMTFDLDPGEGVPWQQVQEAASLLH
VLLQELELPAFLKTSGGKGLHVVVPIKRLLDWDTVKAFSQAVVQHLAHAVPQRFVAKSGP
RNRVGKIFVDYLRNGFGATTACAWTARARPGMGISVPVAWNELDRLTGGAHWTIRSVDQR
LRLGNSPWEHYGTAAVGLGRAMKALGFEAQH
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgccggccacgcgcagcaagttccaggcatcccgccaggcccgccccaccaatggggcg
gccaaggcggcgacaccccaggcctcgctcgcgctgtaccggcaaaagcgcgacttcacg
cgcacaccggaaccttcggcagaaccttccagtgagacgattgcagggcagcccggcgcg
ggcgccctgcaatttgtcattcaaaagcactgggccagccacctgcactacgactttcgg
ctggagctggacggcagcatgaaaagctgggccgtgcccaagggccccagctacgacccg
gccgacaagcgcatggccgtccaggtggaagaccaccccatggcctacaaccgtttcgag
ggccagattccaccgggacagtacggcgcgggcaaggtcatcatctgggactgtggcacc
tggctgcccgagggcgatgcggccgaaggctatcgcaagggcaagctcaagttcgaactg
cgcggccacaagctgcagggccgctggaccctggtgcgcatgcgcggcaaggacgacgcc
aaaaagcccgcctggctgctgatcaaggagcacgacggcctggaacgtgctgccagcgaa
ttcaacgtggtcgaggacatgcccgacagcgtggccggccttcccctgcccaccgctaca
gcgcccgtcaccacgcccgtcgctacgcccgtcaccgcgcccatgccgcagagcatcgcc
ccgcagctggcaaccttggtggaccatgcacctgcagatgccgggcaatggatctttgag
agcaagttcgacggctaccggctgctggcgcgcatcgaggacggcgccgttcgccttttc
acacgcaacggcaaggactggaccaccaaaatgcccgccctggcccacacctttgccgca
ctgcccctgcaatcgggctgggtggatggcgaggtgctgatgctggacagcgacagccgc
cctgacttccaggccctgcaaaacgcctttgacggcgagcgcaccgaccacctggtgttc
ttcgcgtttgacctgctgtggcatgacggccaggacctgcggccccagcccgtggagcag
cgccgccagcagttgcaggccctgctgcacaaggcgccttcggaccgccttcgtttcagc
gaggcctttgacgccccgcccgccgacctggtggccgccgcctgccagctgggcctggag
ggcgtgatcggcaagcggcgcggcagcgcctatgcctcgcggcgcagtgcggactggatc
aagctcaagtgcggcctgcgccaggaattcgtgatcgcgggctacaccgatccccagggc
acgcgcacgggcctgggcgccctggtcctggccgtgcatggcgaggacggccagctgcgc
gcggcaggcaaggtgggcacggggttcaacaggcgcacactggccgacctgcgccagcgc
ctggagcgccttgccaccggcacctcgccgctggcggacagccggggccttggcagcggg
gtgcactgggtgcgccccacgctgctggccgaggtctcgttcgcgcagtggaccgaggac
ggccaggtccgccatgccgtattccagggcctgcgtgcggacaagcctgcgcgcagcatt
gtcaaagaggagccacagcacgtgccatcgaccgcatcttccgccagcgctgcagccacg
cctggcgccgcacgaacgcaaacccgcaatgccagggcggcgcgactgcccgcctcgatg
accatcacccatcccgagcgggtcatcgatccctccaccggcatcaccaagatggatctg
gcgcgctactacgccacggtggcgcccttcatgatcacccacctcaagtcccggcccgtg
gccatggtgcgggcgccggacggcatcgagggcgagctgttcttccaaaagcacctcgac
caggcgccgctgcagggcatcgccgccctgacgccggaactggaccccggccatgccccg
ctgatggaggtgtcccggcgcgaaggcctggtggcggcggcgcagatgaacaccatcgaa
tggcacacctggaacgcgcgcaaggaccgcatcgaccggcccgaccgcatgaccttcgac
ctggacccgggcgaaggcgtcccctggcagcaggtgcaggaggccgccagcctgctgcat
gtgctgctgcaggagctggagctgccggccttcctcaagaccagcggcggcaagggcctg
cacgtggtcgtgcccatcaagcggctgctggactgggacaccgtcaaggccttctcgcag
gccgtggtccagcacctggcccatgccgtgccccagcgcttcgtggccaaaagcgggccg
cgcaaccgcgtgggaaagatttttgtggactacctgcgcaacggcttcggcgccaccacg
gcctgcgcgtggacggcccgggcgcggccgggcatgggcatctccgtgcccgtggcctgg
aacgagctggacaggctcacgggcggcgcgcactggaccattcgctcggtagaccagcgc
ctgcgcctgggcaactccccctgggagcactacggcacggccgccgtgggcctgggccgc
gccatgaaggcgctgggcttcgaggcgcagcactga
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