Drosophila ananassae: 6494940
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Entry
6494940 CDS
T01059
Name
(RefSeq) uncharacterized protein LOC6494940 isoform X5
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dan
Drosophila ananassae
Pathway
dan03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dan00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
6494940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dan03021
]
6494940
03019 Messenger RNA biogenesis [BR:
dan03019
]
6494940
Transcription machinery [BR:
dan03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
6494940
Messenger RNA biogenesis [BR:
dan03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
6494940
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_helical
CFIA_Pcf11
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
6494940
NCBI-ProteinID:
XP_001959356
FlyBase:
FBgn0089121
UniProt:
B3MC78
LinkDB
All DBs
Position
Unknown
AA seq
1882 aa
AA seq
DB search
MEQLFQSYRDDERRIGEEYLSSLQDLNCNSKPLINMLTMLADENINYAHVIVRVVEYYIS
QVAPEFKLPILYLIDSIVKNVKSSYVQLFGQCIVKIFLHAFESVQHSQSQVLEKVRERMY
ALRQTWNEVFPPSKMYALDVQVKRLDNNWPITAKQPTTSKIHVNPAIHVNPDFLKTGMVP
VMPVNSSTLPSDMEEILQAKTRELLELKKRKLELELEQTKKHLEEQERQLNQATDAMVGA
PMAMPAPNSTAAVRPTIMDPSLMGAIRHPRPPAPVGNAGPMIANLPVGQQQFANKPKVNP
VNPALLNSVRQRDPRLARQMQSQALPPTSTRSDPRLESKSASSQKSSRSRSKSPVRNSGS
SSSRSGKSSSSHHSSSSSRKRSESKSSTASSSSSGSEVRHKGGSGSSSSSQSPVKRSSKQ
SSKDHGDRYARNGSPSGSSKRKSSSPSSSPSKPKRSSSSKSSSSSRGKSSSVRSRSRSPV
FMEMDLHSKSPERKAAAPTSIPQTVSSSSSSSATAAAKAPNDLEKPSLLNVATSTTATAA
TTTSSLVRPSSPSLSASSVSSQGNVSDALQQSISKLMKVQGVTGVGEKRPADPMHPEVDL
EEKPPQQKRSKSAKLDALFGSEDVDLRREILVGKPSPSGVIVVEDDSMDNCDPLTKASLP
SKQPTLQEIRAKLAKSARLENKASKSDKSKDQAGIPRHKQLAELRTNEDSQEAHVEKVRT
ILSQAHEMLENHSMNQEQYKDLVQKVVAINENSKVKDSRRRDDDPDLERNAARDAVLRKR
IPKLKGNENHSSGSPRSDGSPRYDDPSATTAEKSVNKRDKSKRENKRRKPSKWGEQVDPA
AAQRAAWQLANANNNNNNNNNNNNKRPGFRGMPWQQPPAIVMPQTAVPPPPQPPSMMGLP
PVPPVTMAKAINSLDNPMADVVRSITIDGGSKEIRFYNQVAIIFMDGDEPHEIGFQHGQR
VILIDNNEPLPLCFNDDYKPFQLDGQLHRIRFGFPSRELYIDDHWYEIYFGGPPVSVPIG
NKIHVLKAEGPPPNVDIGRARRDLVVGKINMIVDAHTIVPLFLDARQQTFQLGAEQHSLQ
FVDAFQYALLDGQLQKIEYGGLPKGMKLNGGRSCFIRFGTLPKGVVGGKTHVADMVYIKT
EAPAEPPQPPPVIVKQPPVVEQPAVVPAVAPNVSLPAAAAALGSLNINELFQKLVSSGII
GGAAPVAGGTATPPTSAPKEANVPPPVSSEAPAPAATPLPTPSAPPTEPIKRINLHKPET
IKTRQSAVIATLYLGMQCSSCGVRFPPEQTIKYSQHLDWHFRQNRRERDSTRKATSRKWY
YDLNDWRQYEEIEDVEEREKNFLEAQGQPGGPDAIDELSQQRSLDSPMPTCAAGSDDVDR
SCDMCHEKFEQFYNEELEEWHLRSAIRVEDKIYHPLCYEDYKASLNPPAEEKINGDVNMN
NTDDNAMDTLIKVEEIDDDDDEPTKPSQSMLDDDDDDVIVLPNEEPSVTEIVDDDDDDEY
VPGNVTRAEMGNESQDKTESNSADKESEKQAEDSEKQSQCESDVANESDVEIQEPNIPFT
DLDTYVEKEIDEATRAAMLNVKIKEEPKDDYEDDEDDGFEDVGTVVPLLPLPDDEISIHS
SETQTQTIASSASPTTIERPASVLSLSLPANEADDLEPAETTGASVAETELNGEQAQEST
HNLSAAGPALPLASIVNKIKINITKNTSSNSHNSASNATAMPSSSSATTDSQVSAISVIG
GAGAGAATGVSGSGDASQQVNAIQTISTIPVLCGGNTFVPKIATSTPANVISSISVIGSS
YGSGSNTSNNGSNSRTNSSVTSTVAGTIPAEAEKSAPTPPPASVEPDPEPVVELKPALRN
VTLKRTKKVQNGIETSGLCSIM
NT seq
5649 nt
NT seq
+upstream
nt +downstream
nt
atggagcaactatttcagagctatcgtgatgatgagcgccgaatcggcgaggagtatcta
tccagcctgcaggacctcaactgcaacagcaagcccctcatcaatatgctcacaatgctc
gccgatgagaacatcaactatgcccatgtcatagtgagagtggtggaatattatatcagc
caggtggcgcccgaatttaaattgcccatactatatttaattgattcgatagtaaagaat
gtgaaaagcagctacgtccaattatttgggcaatgcatagtcaaaatattcctgcacgcc
ttcgagtcggtgcaacactctcagtcccaagtactcgagaaggtacgcgaaagaatgtat
gctctgcgccagacctggaacgaggtctttcccccatctaaaatgtatgccctggacgtt
caggtgaagcgtctggataataattggcccattaccgccaaacagccaaccaccagcaag
attcacgtcaatccggcgattcacgtaaatcccgactttcttaaaactggaatggttcct
gtaatgcccgtcaactcctccacactgcccagcgacatggaggaaattctccaggccaaa
acccgggagctacttgagctcaagaagcgtaaacttgagctcgagttggagcaaacaaag
aaacatttggaggagcaggagcgacagctcaaccaggccacggacgctatggtgggagcg
cctatggcgatgccagctccaaattctacagctgccgttcgtccaaccattatggaccca
tccctgatgggagccattcgccatccacgacccccggcaccagtgggcaatgcagggccc
atgattgcaaacttgccagttggccagcagcagtttgcaaacaagccgaaggttaatccc
gtcaatccggctctactgaactctgtgcggcagcgagatcctcgtcttgcccggcagatg
caatcgcaggcactgccgccgacttcaactcgaagtgatccacgcctcgaaagcaagtcg
gccagctcgcaaaaatctagtcgttcgcgcagcaaatcacctgtgcgcaatagtggcagc
agcagcagccgctcaggcaagagtagcagctcgcatcacagcagttcctcgagccgcaag
cgcagcgagtcgaagagctccacagcctcctcgtcatcgtcgggatctgaagtacggcac
aagggcggcagtggtagcagcagcagctcccagtcaccggttaaacggtctagcaagcag
tcgtccaaggaccacggggatcgttacgctcgcaacggttcaccatcgggatcatcgaag
cgaaagagttcctcaccaagcagctcgccatccaagcccaaacgcagttcatctagcaaa
tcgtcctcttcatccagaggaaagtcatcgtccgttcgatcacggagtcgttcaccggta
ttcatggagatggatttgcacagcaagtcgccggagagaaaggcagcagcacccacatct
atcccccaaacggtcagctcatcatcatcatcgtcagcgacagctgctgctaaagcacca
aatgatttagagaaaccatcactgctaaatgtcgccacatctacaacagccacagctgcc
accaccacctcaagtctagtcagaccatcatcgcccagtctatcggcgtcgtcagtttcc
tcgcagggtaatgtatccgatgctctgcagcagtccatctccaagctaatgaaggtacag
ggcgtaactggtgtcggcgagaagcgaccggccgatcccatgcatccggaagtcgatctt
gaggagaagccaccgcaacagaaacgcagcaagtcagccaaactggacgcattatttgga
agcgaggatgtggatttgcgtcgcgagattcttgttggaaagccaagtccctcaggagtt
attgtggtggaagacgactccatggataactgcgatccattaaccaaagcaagcctgcct
tcaaagcagccaacactgcaggaaattcgcgccaagttggccaaatcagctcgtctggag
aacaaggcaagcaagtctgacaagagtaaggatcaggcaggtataccgcgccacaagcag
ctggccgagctaaggaccaatgaagactcccaggaggcacatgtcgagaaggtgcgcaca
attctcagtcaagcgcacgagatgctcgaaaaccacagcatgaaccaggagcagtacaag
gatcttgtgcagaaggtggtggccatcaatgagaacagcaaggtgaaagactcccgccgg
cgtgacgatgatccagatctggagcgaaatgcggccagggatgccgtgcttcgtaaacgt
attcccaaactgaagggcaacgaaaaccattcctcaggatctccccgaagcgatggctcg
cccagatacgatgatccgtcagccaccactgctgagaaatctgtgaataagcgggacaag
tccaagagggagaacaagcgtcgaaagcccagcaaatggggcgagcaggtggatccagcg
gcggcccaacgagctgcctggcagttggccaatgccaacaacaataacaacaacaacaac
aataataataacaaacgccccggcttccgaggcatgccatggcaacaacctccggcaatc
gtgatgccacagacggcagtgccaccacctccacagccgccttcgatgatgggtctgccg
cccgtgcctccagttaccatggcgaaggccattaactcactggacaatccaatggctgat
gtggttcgcagcattaccattgacggcggttccaaggagattcgattctacaaccaagtg
gccatcatcttcatggacggcgacgagccgcatgaaattggcttccagcatggccagcga
gtcatcctcatcgacaacaatgaaccactgcctctttgttttaacgatgactataagccg
ttccagcttgacgggcagttgcatcgcatccgctttggttttccctcacgcgaactgtac
atcgacgatcattggtatgagatctactttggtggaccgccagtctcggtgcctattggg
aataagattcatgtactgaaggcggagggtcctccaccaaatgtggacattggtcgggca
cggcgagatctggtcgttggcaagatcaacatgattgtggatgcacataccattgtgcct
ctcttcttggacgccaggcaacaaacgttccaactgggagccgaacagcattcgcttcag
tttgtggacgccttccagtacgctcttttggatggtcagctgcagaaaatcgagtacggt
ggccttccaaagggaatgaagctgaacggtggccgcagttgcttcataagattcggcact
ttgcccaaaggtgttgttggtggcaagacgcacgtggcggatatggtttacattaagaca
gaggctcctgccgagccaccgcaacctccgccggtgattgttaagcaacctccggtagtg
gagcagccggcagtggtgcctgctgtagcaccgaatgtatctctgccagctgcagcagca
gccttgggcagtctcaatatcaatgagctgttccaaaagctagtttcctcgggaataatt
ggtggagctgcacctgttgctggcggaacagccaccccgcctacatcagccccaaaggaa
gccaatgttcctccaccagtgtcttcagaagctccagctccggctgctacgcctcttccc
acgccatctgctccgcccacagaacccattaaacggattaacctccacaagccggagact
attaagactcgtcagtcggcggtgatagctactctctatctcggcatgcaatgcagtagc
tgcggagtgcggtttccgcctgaacagacgattaaatacagccagcatctggattggcac
ttccggcagaaccgcagggaacgcgactctacccgaaaggccacatcgaggaaatggtac
tatgatctcaacgattggaggcagtatgaggaaattgaggatgttgaggagcgtgagaag
aacttcctggaggcgcaaggtcaacccgggggaccggatgcaatcgatgaactctcccag
cagcgatccctggactcaccgatgccaacgtgtgcagccggatcggatgatgtggatcgc
agttgcgacatgtgtcacgagaagttcgagcagttctacaacgaagagctggaggagtgg
catctccgtagcgccatccgggtggaggataagatctatcacccattgtgctatgaagat
tataaagcctccttgaatcctccggctgaggaaaagataaatggggatgtgaacatgaac
aacactgacgacaatgccatggatacgcttatcaaggtggaggaaatcgatgacgacgat
gatgaacccaccaagccatcccaatccatgttggatgatgatgatgatgacgtcattgtt
ttaccaaacgaagagcccagcgtcacagaaatcgtcgacgacgatgatgatgacgagtac
gtccctggcaatgtgacaagagcggaaatgggaaatgagtcccaggacaagacagagtcc
aattccgcggataaggaatcggagaagcaggcagaagactccgaaaagcaatcacaatgc
gagtctgatgtagccaacgaatcagatgtagagatccaggagcccaacattcccttcacc
gatttggacacgtatgtggagaaggagatcgacgaagccaccagggcagcgatgctcaac
gtaaagattaaggaggagcccaaggacgattacgaggatgacgaggacgacggctttgag
gatgttggcacggtggttccacttttgcctcttcccgacgatgagatctccatacacagc
agcgaaacacaaacgcagaccatcgcctcgtcggcctcgccgaccacaatcgagagaccg
gcatcagtgctatccctgtcattacccgccaacgaggcggacgacctggagccggcagag
acgacaggtgcctcggtcgccgagacagaactgaacggagagcaggcgcaggagtccaca
cacaacctgagcgcagcgggtccggcgttacctttggctagcatagttaataaaataaag
ataaatatcactaagaatacaagtagtaatagtcataatagtgcctccaacgccaccgcc
atgccatcttcatcgtcggcgacgacggactcgcaagtatcagcaatcagcgtcatcggg
ggagctggagctggagctgcaacaggtgtatccggatccggagatgcctcgcagcaggtt
aacgccattcaaactatttcaaccattccagtcctttgcggcggaaacacgttcgtgccg
aagattgctaccagcactccggccaacgtcatcagctcgatttctgtgattggcagtagt
tacggcagtggcagcaacaccagcaacaacggaagcaacagtcggactaacagttccgtg
acttcaacggttgctggcacaattcctgcagaagcggagaagtcagcgcccacaccacca
ccggcttctgtggagccagatcctgagccggtggtggaactgaaaccggcgcttcgaaat
gtgacgctcaagcggacgaaaaaggttcagaacggcattgagacgtccggcctgtgttcg
attatgtaa
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integrated database retrieval system
