Dickeya aquatica: DAQ1742_01617
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Entry
DAQ1742_01617 CDS
T06021
Symbol
uvrB
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
daq
Dickeya aquatica
Pathway
daq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
daq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DAQ1742_01617 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
daq03400
]
DAQ1742_01617 (uvrB)
DNA repair and recombination proteins [BR:
daq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DAQ1742_01617 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DAQ1742_01617 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
SBDS_domain_II
AAA_30
UB2H
AAA_22
DUF87
Motif
Other DBs
NCBI-ProteinID:
SLM62575
UniProt:
A0A375A979
LinkDB
All DBs
Position
1670554..1672566
Genome browser
AA seq
670 aa
AA seq
DB search
MSKVFKLHSAFQPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPT
MVLAPNKTLAAQLYGEMKAFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQ
YTRNDQAFSRGTFRVRGEVIDIFPAESDEVALRVELFDEEVERLSLFDPLTGHIIQTLPR
YTIYPKTHYVTPRERILQAMEEIKVELAQRREVLLANNKLLEEQRLMQRTTFDLEMMNEL
GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQLGGMYRGDRARKET
LVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGKYELEKSGGDVIDQVVRPTGLLD
PVVEVRPVGTQVDDLLSEIRKRVAVNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLNGRAILYGDKITPSMERAIGETERRREKQQAHNEKHGIVPQGLNKKIDDILQLG
QPSAGKGKGRGKKAASDNAAYQALSPKALEQKIRELESQMLSHAQNLEFEEAARLRDDIH
ALREQFIALS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagtattcaaattgcattccgcctttcagcccgcaggcgaccagccagaggcg
attcggcggctgaaagagggactggaagatggtctggcacatcaaaccttgctgggcgtt
accggctcgggcaagacgtttaccatcgctaacgtgattgctgacctgaaccggccaacc
atggtgctggctccgaataaaaccctggcggcgcagttgtacggcgaaatgaaagccttt
ttccccgataatgcggtggagtatttcgtctcttactacgattactaccagcctgaagcc
tacgtcccgagttcggatacctttatcgaaaaagacgcctcggtgaacgagcatatcgag
cagatgcggctgtcggccacgaaagcgttgctggagcggcgtgatgtggtggtggtggcg
tcggtgtctgccatctatggtcttggcgacccggacttgtacctgaagatgatgttgcat
ttgacgcaggggatgctgattgaccagcgtgctatcttgcgcaggctcgccgagttgcag
tacacccgtaacgatcaggccttttcgcgcggcacgttccgggtgcgcggtgaggtgata
gatattttccccgccgagtctgacgaggttgcgctacgggtcgagctgtttgacgaggaa
gtcgagcgcttgtcgctgtttgacccgttgaccggccacatcatacaaacactgccgcgt
tacaccatctacccgaaaacccactatgtcacgccgcgtgagcgcattttgcaggcgatg
gaggagataaaggtcgagctggcgcagcgccgcgaggtgttgctggcgaataacaaactg
cttgaagagcagcggctgatgcaacgcaccaccttcgatttggagatgatgaacgagttg
gggtattgctcgggcattgaaaactattcgcgctttttatccggtcgcgggccgggtgag
ccgccgccgaccctgtttgactatctgccggcggatggcctgctggtgattgacgagtcg
catgtcactatcccgcagttaggcggcatgtatcgcggcgaccgggcgcgcaaagaaacc
ctggtggagtacggttttcgcttgccgtcggcgctggataaccggccgatgaagtttgaa
gagttcgaggcgctggctccgcaaaccatctatgtgtcggccacgccgggcaaatatgag
ctggagaagtccggcggtgacgtcatcgaccaggtggtgcgcccgaccggcctgctcgac
ccggtggtggaagtgcgcccggtgggcacgcaggtggatgatttactgtctgaaattcgc
aagcgggttgcggttaatgagcgggtgctggttacgacgctgaccaaacgcatggccgag
gatttaaccgagtatcttgaagagcacggcgagcgggtgcgctatctgcattcggatatc
gacaccgttgaacgggttgaaatcattcgtgatttgcgcctgggtgaatttgatgtgctg
gtgggcatcaacctgctgcgtgaaggactggatatgccggaagtgtcgctggtggcgatt
ctggatgcggacaaagagggctttttacgctctgagcgttcgcttattcagaccattggc
cgcgcggcgcgaaacctcaatggccgggcaattttgtatggcgacaagataacgccctcg
atggagcgcgctattggtgaaaccgagcggcggcgtgagaaacagcaagcgcataacgaa
aaacacggcattgtgccgcagggcttgaataagaaaattgacgatattctgcaactgggc
cagccgagcgcgggtaaaggcaaagggcggggtaaaaaagcggcgtctgataacgctgcg
tatcaggctctctcgcccaaggcgctggagcagaaaatccgcgaactggaaagccagatg
ttgtcacatgcgcagaatctggagtttgaggaggccgcgcgcctgcgcgatgacatccac
gcgctgcgtgagcagtttattgcgctatcgtaa
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