Candidatus Desulforudis audaxviator: Daud_0598
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Entry
Daud_0598 CDS
T00655
Name
(GenBank) conserved hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dau
Candidatus Desulforudis audaxviator
Pathway
dau03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Daud_0598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dau03400
]
Daud_0598
Enzymes [BR:
dau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Daud_0598
DNA repair and recombination proteins [BR:
dau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Daud_0598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ACA59132
UniProt:
B1I253
LinkDB
All DBs
Position
634666..635610
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AA seq
314 aa
AA seq
DB search
MRYLVPSFSKGDPLVPTVLIGRQKVDLTNLDKVFWPEGYTKGDLVNYYHRVAPYVLRYLR
DRPIVMSRYPDGINGKHFYQKERPEYTPDWIETVLVAHEGAQRVINYIVCRDEATLVWIA
NQGAIEMHAWLGRAGRLEYPDLAVLDLDPAAGAKWRQVIDVALLARTVLAEFGLAGFPKT
SGATGVHVFIPLEPVHTYRETTRAMEAVARLVTGVCAFATTERVIERRTGKVYIDYLQNT
AGKTMAFPYSVRPLPSAPVSTPVTWEELEDLKAAKGFNIKTVPERLQNLGDPYAGLFNRH
YRLDALLELAPSPA
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgcgttacctggtcccgtctttctcgaagggggatccgcttgtgccgacggtactcatc
ggccgccagaaagtggacctgaccaatctggacaaggtattctggccggaaggatacacc
aagggcgacctggtgaattactaccaccgggtggcgccgtatgtgctccgctacctcagg
gaccggccgatcgtaatgagccggtatccggacgggatcaacggaaaacacttctaccag
aaggagagaccggaatacacgccggactggattgaaacggtgctggtggcccacgagggc
gcccaacgggtgataaactacatcgtgtgccgggacgaggcgaccctggtctggatcgcc
aaccagggggcgatcgagatgcacgcctggctgggcagggccggccgcctcgagtacccg
gatctggccgtcctcgatctggatccggcggcaggggcgaaatggcgccaggtgatcgac
gtggcgctgctggcccgcaccgtgctggccgaattcggcctggccggtttccccaagacc
tcgggagccaccggagtgcacgttttcattcccctggaaccggtgcacacctaccgggag
acgacacgggcaatggaggcggtggcccgcctggtcaccggcgtttgcgcgttcgccacc
accgaacgggtgattgaacggcggaccggcaaagtgtacatcgactatctgcaaaacacg
gcgggtaaaaccatggctttcccgtacagtgtgcgccccctcccgtcggctcccgtgtcc
acccccgtaacctgggaggaactcgaagatctgaaagcggcgaaaggtttcaacataaag
accgtgccggaacgcctacaaaacctgggtgacccctatgccggacttttcaaccgccac
taccgtctggatgccctgctggaactcgccccgtcccccgcttag
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integrated database retrieval system
