Desulfoglaeba alkanexedens: FDQ92_09785
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Entry
FDQ92_09785 CDS
T05964
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dax
Desulfoglaeba alkanexedens
Pathway
dax03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FDQ92_09785 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dax03400
]
FDQ92_09785 (mfd)
Enzymes [BR:
dax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FDQ92_09785 (mfd)
DNA repair and recombination proteins [BR:
dax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FDQ92_09785 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
MFD_D3
AAA_22
AA_kinase
AAA_30
RecG_dom3_C
IstB_IS21
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QCQ22423
UniProt:
A0A4P8L3X7
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All DBs
Position
2151793..2155362
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AA seq
1189 aa
AA seq
DB search
MEPATETVVRPGRAASDVPSATLEDVRAFLRSSSESLAVSGFPSSAAAYLVSRILDLASR
HMVVVTATDREAEQLADEIRFFLGKKRLKPDVPLERRVWTLPSRSGHKAQVLGKAEAIAR
RMEALYALRNAPRPSVVVTSALALIERVVPPEVLLRHAECRVAGEEIPLEAFRRRLVERG
YYNVSLVEEYGDLSLRGGVLDIFAPLYGWPLRLEFFGDQLESIRLFHPSSQRSLATMEDA
ILLPASEIVLEAAGRERAERALMEDIQRGRLTPAAGSAWLEKLQEGHQLAAFEPVLPVFY
GELGSLFDYLDPQSLLVWTDAAALQKEMHEAYQRVLWEWDRSRTEQDWRRPPEELFVEPE
MVLERAETVREIRINALSGEGGGGRLNLAVSGQDDLLAAVKSHRSRERLLEPLSQQIKRW
QDRDIRTVLVCGQKEQGARLASLLSDYGLEARPQPAAAIRDGFDAGTTAVVVGPLHRGFF
WPSEKLSVVSEEEIFGRRRPRRRAKASVAGIFLSSFQDLHAGDFVVHVDHGIGVYKGLMH
LQVGGVEGDFLHLEYQDGDRLYVPVDKLQKIQKYLGIEGEDPRVDKLGGKSWEAAKKKAR
ESACRVAEELLKLYAMRQVREGIRFSPPDSLYREFEATFAYEETADQIRAIEEVLEDMCS
QKTMDRLICGDVGYGKTEVAIRAAFKAVMDGKQVAMLVPTTVLAEQHYQTFKERFNGFPV
RVEVLSRFKTAAQQRQVLDGLKAGAVDVVVGTHRLLQKDVQFRELGLLIIDEEQRFGVKH
KERLKQLRVSVDVLTLTATPIPRTLHMALTGIRDLSTIETPPEDRKAVETAVCTYDEFTI
REAIHRELQRGGQVFFVHNHVQSILQVANRLRKLVPEARIGVAHGQMKERDLEKVMFEFI
GRELDVLVCTTIIESGLDIPAANTIIINRADKMGLAQIYQLRGRVGRSSEQAYAYLLIPG
EHLVTRDAQKRLRALMDFSELGSGFKIALNDLQIRGGGAILGAAQSGHISAVGYELYLEL
LEKTVRQLKGEPVEEEAFDPEITVPVSAFLPEAYVPDTDQRLLAYKRLAGVSEEGDVDDL
AREWRDRFGPLPDSAKALALLAKIRLLLQRRRVARLEGDLQTYTLHFLEPIDFEKMSRVL
ADEKCFARMEGPRKLILEMAGRGALGHLARLKRILQAFGEHGSDIKSIQ
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
ttggaacctgcaactgaaacggtggttcgcccgggtcgtgcggcgagcgacgtcccatcg
gcgacgctggaagacgttcgtgcttttttgaggagttcatcggagtcgcttgccgtttcg
ggctttccgagttccgcggcggcctacttggtgtctcggatcctcgatctcgcatcgcgc
cacatggtggtcgtgaccgccacagaccgggaagcggaacagctggccgacgaaatccgc
ttcttcctggggaagaaacggctcaaacccgatgtgcctctggaacggcgggtctggaca
ctcccttcccggtcgggccacaaggcccaggtacttggaaaagccgaagccattgcccgc
cgcatggaagctctctatgccctgcggaatgctccccggccttcggtggtcgttacctca
gcactcgccctcatcgaacgcgtggttccgccggaagtgctgctgcggcacgcggaatgt
cgagtcgccggagaagaaatcccactggaagcctttcgccgccggctggtggaacgcggc
tattacaacgtgtctctggtggaggagtacggggatctgagccttagaggcggagtgctc
gatatcttcgcaccgctctacggctggccgctccgcctggaatttttcggtgaccaactg
gaatccatccggctgtttcatcccagcagccagaggtcgctggccaccatggaggacgcg
atcctgcttccggcgagcgaaatcgtgctggaggcggccgggcgggaacgggcggaacgg
gcgctcatggaagacatccagcgcgggcggctcaccccggcggccggcagcgcctggttg
gaaaagctccaggagggccatcaactggccgccttcgaaccggtcttgcccgtattttac
ggagaactggggtcgctcttcgactacctggaccctcaaagcctgctcgtttggaccgat
gcggcggctcttcagaaagagatgcacgaagcctaccagcgggtgttgtgggaatgggac
cgtagtcgtacggagcaggactggagaaggccgcctgaagagctgtttgtggagccggaa
atggttctggagcgggcggagacggtccgggagatccggatcaacgccctttcgggggag
ggcgggggcgggcgcttgaacctggccgtgagcggtcaggacgacctcctcgctgcggtg
aaatcccaccgcagccgggagcggcttctcgaacctctgtcgcaacaaatcaaacgctgg
caggaccgggacatccgaacggtcctggtctgcggccagaaggaacagggagcccggctg
gcgtcgctgctttccgactatggcctggaggcccggccgcagcctgccgccgccatccga
gacggctttgatgccggaaccacggcggtggtggtgggacccctgcacaggggctttttc
tggccttcggagaaactgtcggtggtcagcgaggaagagattttcggcaggcggcggccc
cggaggcgggccaaggcgtcggtggccgggatctttcttagctcattccaggatcttcat
gccggggatttcgtggtccatgtggaccatgggatcggcgtgtacaaaggactgatgcac
ctgcaggtcggaggggtcgaaggggactttttgcacctggaataccaggacggtgaccgg
ctttacgtccccgtggacaagcttcagaagatccagaagtacctggggatcgaaggcgaa
gatccacgggtggacaagttggggggtaagtcctgggaggcggccaagaagaaggcccgg
gagtcggcctgccgggtggccgaagaattgctgaagctctacgccatgcgacaggtgagg
gaaggcatccggttttcgcctccggacagcctgtaccgcgaattcgaggcgacctttgcg
tacgaggagaccgccgaccagatccgtgccatcgaagaagtcctggaggacatgtgttcg
cagaagaccatggatcggctcatctgcggcgatgtgggttacgggaagaccgaagtcgcc
atccgggcggccttcaaagcggtgatggacggcaagcaggtggccatgctggttcccacg
acggtcctggcggagcagcattaccagaccttcaaggaacggttcaacggctttcccgtg
cgggtggaagtcctgagccggttcaagacggccgctcagcagcggcaggtgctggacggg
ctgaaagccggtgcggtggacgtcgtcgtgggcacccaccggctgctgcagaaggacgtg
cagtttcgagaactggggcttctcatcatcgacgaagaacagcgcttcggcgtgaagcac
aaggaaagactgaagcagctgcgggtgtccgtggacgtgctgaccctcacggccaccccc
atccccaggacactccacatggctctcaccggcatccgggatctcagcaccatcgaaacg
cctcccgaagaccgcaaggccgtggaaaccgccgtctgcacctacgatgaattcaccatc
cgggaggccatccaccgggaactccagcgcggaggccaggtcttctttgtccacaaccac
gtacaaagcatcctccaggtggcgaaccggctgcgcaagctggtgccggaagcgcggatc
ggcgtggcccacggtcagatgaaggaacgagacctggaaaaggtgatgttcgaattcatc
ggccgagaactggatgtcctggtctgtaccaccatcatcgaatcggggttggatattccg
gcggccaacaccatcattatcaaccgagcggacaagatggggctggctcagatctaccag
ctcagagggcgggtcgggcgatccagcgagcaggcttacgcctacctgctcatcccgggg
gaacacctggtgacccgcgacgcccagaaacggctccgggccctcatggatttcagcgaa
ctgggttcgggcttcaagatcgccctgaacgacctgcagattcgcggcggcggggcgatt
ctcggcgccgcccaatccggccatatttcggccgtgggctacgaactgtacctggaactg
ctggaaaagacggtcagacagctcaagggcgaaccggttgaagaggaagcgtttgatccc
gaaatcaccgttccggtttccgcttttctgccggaagcttacgtgccggacaccgaccag
cggctcctggcctacaagcgcctggccggggtttcggaggaaggcgacgtggacgacttg
gcccgggaatggcgcgatcggttcggaccgcttcccgacagcgccaaggcgctggccctg
ctcgccaagatccgcctgctgctccaacgccgccgggtcgcccggctggaaggagacctc
cagacgtacaccctccatttcctggaaccgatcgatttcgagaagatgagccgagtcttg
gcggatgaaaagtgtttcgcacggatggaaggccccaggaagctgatcctggagatggcc
ggccgcggggcgctggggcacctggcaaggctgaaaaggatcttgcaagcgttcggggaa
catggtagtgacatcaagtcaattcagtaa
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