Desulfomicrobium baculatum: Dbac_0988
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Entry
Dbac_0988 CDS
T00963
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dba
Desulfomicrobium baculatum
Pathway
dba03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Dbac_0988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dba03400
]
Dbac_0988
Enzymes [BR:
dba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dbac_0988
DNA repair and recombination proteins [BR:
dba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Dbac_0988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_16
DUF1611_N
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ACU89103
UniProt:
C7LQ77
LinkDB
All DBs
Position
1071994..1075434
Genome browser
AA seq
1146 aa
AA seq
DB search
MIIPQALQKLIDGSERQTRIFKSGPASQMFLAQALIEKGHNVVLVLPPSADLPLYDSLAR
LFSPADRNLSFWERRWLRFPHYSVEDPRRSPWPERWRTLFALTQKKRGRGVLLPLENLIQ
KWPHPELLQREHLNLSEGEEISQEDLLETLVNWGYARVSMVTAVGETSLRGDIMDIFCPG
YDHPLRLEFFGDTLERIRLFEPMSQRSRAELKSLTILPVAGCIGADTYKEEARSMFDGWL
RLGEIAKPARAGLEKELLQVHPHLPPSMYYPRTVGLEAWLPEGSVFIMAEAQDLRTKLDE
TSWAWQNYFRDDERQWPRHGLIQTPGDVRKTWEDSRQILCESLVMGVREEGLDLPEEGVS
SFEELFWTPESRSRPWRALMQELAVWRRTYAQTIFCFHTEQSRKKFLQLAAQDDHVLKTE
YDAQGKGIFALVGSLGHGMRLPWAEIQILPESVLQPGAPKAQRSAGKAFKGLDAFDELES
GDLLVHRDYGLCRFGGLHRIKFGDVANDYLLLQYDGEDRLYLPVDRLGQVQRYKGPDGAA
PALDRLGSAAWSKARERTRQSIAKIARDLVEMYAFRKIAKGFQYNPISELYWEFEASFGF
EETRDQEKAIADVLADMEKPEPMDRLVCGDVGFGKTEVALRAAFRAVLDGKQVALLCPTT
VLAEQHFQTFRQRMEPFSITVGLLSRFVPAAGQKRTLEAARRGQVDVLIGTHRMLSKDVE
FANLALLILDEEQRFGVKHKERIKKMRSTIDVLTLTATPIPRTLQLSLSGIRGLSVIETP
PRDRKPVETSLLERDPAQLKVILERELARGGQVFWVYNRVQGLERVVEFVSSLVPGARVG
MGHGQMKAHDLEETMHKFWHGELDVLVCTAIIESGLDFPRANTLIVDQAQLFGLGQLYQL
RGRVGRSSEQAYAYFIIPDLDRLQETSRKRLKIILDMDYLGAGFKVAMEDLRLRGAGNIL
GEAQSGTIGKVGLDLFLEMLEEEVTRLRGGKVETEIEPELNLGFQALIPEEYVADGKERL
HYYKALSSCHDEGAIVEIVDDMRDRFGSLPEALKTFVAVLMIKIDARRLGAVRVDLFEDR
ALIHWDETRHNVDLSKLMGWVGENAACARILPPAKLELRLPAAASPTHAMHGLKDQLLVL
RERIKL
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
gtgatcatcccccaagccttgcagaagctcatcgacggatcagagcgtcaaaccagaatc
ttcaaaagcggtcccgcttcgcagatgtttctggctcaggcgttgattgaaaagggccac
aatgtcgtgctggtgctgccgccaagcgcggatctgcccttgtacgactccctggcgcgc
ctcttttcgcctgcggacagaaacctttccttttgggagcggcgctggctgcgttttccc
cattattcagtggaggacccacgtcgttccccttggccggaacgctggcggacccttttt
gccctgacgcagaaaaagcggggacgcggggtgctcctgccgcttgagaacctgattcag
aaatggccgcacccggaactcttgcagcgggagcatctgaatctgtcggaaggcgaggag
atttcccaggaggatctcctggagactctggtcaactgggggtatgcacgcgtttccatg
gtcaccgccgttggcgagacgtccctgcgcggcgacatcatggatattttttgtcccggc
tacgaccacccgctgcgactggaatttttcggcgacaccctggagcgcatccggcttttt
gaacccatgtcccagcggtctcgcgccgaactcaaatccctgacaattctgcccgtggcc
ggatgcataggtgccgacacatacaaggaagaagcccggagcatgttcgacggatggttg
cggctgggtgagattgcaaagcctgctcgcgcggggcttgaaaaggagctgctgcaggtc
catccgcatttgccgccgagcatgtactaccctcggaccgtcggcctggaggcctggctt
cccgaagggagcgtcttcatcatggccgaggcccaggatttgcggaccaagctcgacgag
acaagctgggcctggcagaattattttcgcgacgacgagcggcagtggccccggcacggc
ctgatccagactccgggcgacgtgcgcaagacctgggaggacagtcggcagattctctgc
gagagtctggtcatgggggtgcgcgaagaagggctggacctgcctgaagagggggtaagt
tcgttcgaggaacttttctggaccccggaaagccgctcccggccatggcgggcgctgatg
caggaacttgccgtctggcgcagaacctacgcccagaccattttttgtttccataccgaa
cagtcccgcaaaaaatttctgcagctcgcggcccaggacgaccatgtgctcaaaaccgag
tacgatgcccagggcaagggaatcttcgccctggtcgggtctttgggacatggcatgcgc
ctgccttgggccgaaatccagattctgcccgagtccgtgctccagccgggggctcccaag
gcgcagcgtagcgcaggcaaggcattcaagggtctcgatgcctttgacgagcttgaaagc
ggcgatcttctggttcatcgcgattatggcctgtgccgctttggcggcttgcatcgcatc
aagttcggggacgtcgccaacgattacctgctgctgcagtacgacggtgaggaccggctc
tatctgccggtggaccgtctggggcaggtgcagcgctacaaggggcccgacggcgcggcc
ccggctctggaccgtctgggcagcgcggcctggagcaaggcccgcgagcgcactcgccag
tccatcgccaagatcgcgcgcgacctggtcgagatgtacgcattccgcaagatcgccaaa
ggttttcagtacaatcccatctccgagctgtattgggaattcgaggccagtttcggcttc
gaggagacgcgcgatcaggaaaaggccatcgccgacgttctggccgacatggaaaagccc
gagcccatggaccggctggtctgcggcgacgtgggcttcggcaagaccgaggtggccctg
cgcgcggctttcagagcggtcctggacggcaagcaggtggctctcttgtgcccgaccacc
gttctggccgaacagcatttccagactttccggcagcgcatggagccgttctccatcacc
gtggggctcctgagccgctttgtgcctgccgccggacaaaaacgcacccttgaagccgcg
cgccgcggccaggtggacgtcctcatcggcacccaccgcatgctctccaaagacgtggag
ttcgccaatctggccctcctgattctcgacgaagagcagcggttcggcgtcaagcacaag
gagcgcatcaagaaaatgcgttcgaccatcgatgtcctgaccctgaccgccacgcccatc
ccgcgcaccttgcagctctccctgtccgggatccggggccttagcgtcatcgagaccccg
ccgcgcgatcgcaagccggtggagacctcattgctggaacgcgatccggcccagctcaag
gtcatcctggagcgcgagctggcccggggcggccaggttttctgggtctacaaccgggtg
cagggactagagcgggtggtggagttcgtgtcctccctggttcccggtgcgcgggtcggc
atggggcatggccagatgaaggcccacgatctggaagaaaccatgcacaagttctggcat
ggcgagctcgacgtgctggtctgcacggccatcatcgagtcgggccttgattttccccgc
gccaacactctcatcgtcgaccaggctcagcttttcgggctcggccagctgtaccagctg
cgcggccgggtagggcgctccagcgagcaggcctacgcctatttcatcatccccgacctg
gaccgcctgcaggaaacctcgcgcaaacgcctgaaaatcatcctcgacatggactacttg
ggcgcgggcttcaaggtggccatggaagacctgcgcctgcgcggagccggcaacatcctc
ggcgaggcccagtccgggactatcggcaaggtcggcctcgacctctttttggaaatgctt
gaggaagaggtgaccagattgcgcggcggaaaggtcgaaacggagatcgagccggagctc
aatctcggcttccaggccctcattcccgaagagtacgtggccgacggcaaggaacgcctg
cattattacaaggccctgtcctcctgtcacgacgagggggccatcgtcgaaatcgtggac
gacatgcgcgaccgcttcggctctctgcccgaggcgctgaagacctttgtggccgtgctc
atgatcaagattgacgcacgcaggctgggcgcggtgcgggtggacctgttcgaggaccgg
gcgcttatccactgggacgaaacccggcataatgtcgacctctccaagctcatgggttgg
gtgggcgaaaatgccgcctgcgcccggattttgccaccggccaagctggagctgcgcctg
cctgccgcggcctcgccgacccatgccatgcatgggttgaaagaccagctgctggtgctc
agagagcggatcaagctgtga
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