Desulfotomaculum nigrificans: Desca_0098
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Entry
Desca_0098 CDS
T01498
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dca
Desulfotomaculum nigrificans
Pathway
dca03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Desca_0098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dca03400
]
Desca_0098
Enzymes [BR:
dca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Desca_0098
DNA repair and recombination proteins [BR:
dca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Desca_0098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_22
RecG_dom3_C
DUF5937
DUF1474
DUF924
Motif
Other DBs
NCBI-ProteinID:
AEF93003
UniProt:
F6B4I0
LinkDB
All DBs
Position
96498..100007
Genome browser
AA seq
1169 aa
AA seq
DB search
MKGLLKPLEATIEYQHLLQGLEKGFRQQMVFGLAGSQRSYLFAGLAHTRRSVLVVAPGET
EAAALADDLTSLLPDLSVQLFPVWQMLPYQVLAHSNEVLAQRLRVLEQLSAGEPLVVVTS
PEALLRRLTPPDIFSRAKLSFSLGQRVDLEKMRQDLIKMGYERVDLVEGPGQFSSRGGII
DIFPMTAARPVRIEFFDDEVDSIRHFDVDNQRSLDKLKGISISPCRELVLTPAAWQRGKE
NYEAEYKNQLKKLQRSGSVDAVHQLSSQGAMLLDQIHGQIPFEGMEQLHSFFYPEPVTLL
DYFAEKPLLLVDDPIRFKEVVDTILRERNETYTDLLAKGKVLPGQFNSYLDWPKLLAPLE
RCQGIYCSFLPRNPQYIKAQNVVNFPAKAMHSFLGHYEVLADEIRHWRRRGYAVVLLVSS
EERATNLLQLLKDAKVDAFHIKQLDNEVKEGNVVITVGQLANGFELISARLAVITDQEIF
GQRKKARKHRVKADSRMEPLADLKAGDYVVHVNHGIGRYLGMVSLNIGGLQKDYLQLQYA
GEDKLYVPTDQVGMLQKYLGAEADHPKLSRLGGTEWAKAKAKVKEAVRDMAKELLELYAA
RQTVKGHAFSPDTPWQAEFEAQFPYEETPDQLRAIAEVKRDMEKERPMDRLLCGDVGYGK
TEVALRAAFKAVMDNKQVAVLVPTTILAQQHYNTFRERFANYPIRIEMLSRFRTPKEQRQ
VLAGLATGEVDVVIGTHRLVQDDVIFKDLGLLVVDEEQRFGVAHKERLKQMRKNVDVLTL
TATPIPRTLHMSLVGVRDTSVLETPPEERFPVQTYVLEEDPTLIREAIRRELNRGGQVYF
VHNRVMDLDRLAGWLQDLVPEARIAVAHGQMKEDELEQIMLEFMDGAYDVLVCTTIVETG
LDISNVNTLIVKDADHFGLSQLYQLRGRVGRTNRLAYAYFLFRRDKVLTEVSERRLSAIR
EFTEFGSGFKIAMRDLEIRGAGNILGAEQHGHIAEVGFDLYCRLLEEAVHEARGEKVEQP
VDTAVELPVEAYIPDQYVPDGNQKVELYRRLAGMRELSEIADMEEELVDRFGDLPESVQN
LLKVTALKILGSQLKIKSISRGQGYYRLLFAPEAPLDGEKLVAISEKYKYNVKFNNSTEG
FEIKLASKDKGTVSLRKLEQLETFLGRLK
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaagggactacttaagccacttgaggcaacaattgaatatcaacacctgctgcaggga
ctggagaagggttttcggcagcaaatggtctttggtctggccggttcccaacgtagttat
ctttttgccgggttggcccatacccgtcgctcggtgctggtggtggcccccggggagact
gaggccgcagcattggcagacgatctcacttcgttgttaccggacctttcggtgcaactt
tttcctgtctggcaaatgctgccctaccaagtgctggcccatagtaatgaggtgctggcc
caacgtttaagggtgctggaacaactatcagcgggggaacccctggtggtggtgacctca
ccggaggccctgctgcgtcggctcacgccacctgatattttcagccgggcgaaactgtct
tttagcctggggcagcgggtagacctggaaaaaatgcgccaggacctgatcaaaatgggt
tacgaacgagtagatttggtggagggaccgggccaattttccagccggggcggcatcatt
gacatttttcctatgaccgctgcccggcccgtacgcattgagttctttgatgacgaagtg
gattccatccgtcattttgacgttgataatcagcgttcactggataagctgaagggaatc
agcatctctccctgccgggaactggtgcttactccggcagcctggcagcggggcaaggaa
aattatgaagccgaatataaaaaccagctaaaaaaattacaacggtccggctcggtggat
gcggtgcaccaactatcatcccagggggctatgctgctagaccaaattcatggtcagatc
ccctttgaaggaatggaacagctgcactcctttttctatcctgaaccggttactttatta
gattattttgcggaaaaaccgctgctgttggttgatgatcccatccgctttaaagaagtg
gttgataccatattaagggaacggaatgagacctatactgacttgttagccaagggtaag
gtgctgccggggcaatttaacagttatttggattggcccaagttgctggctccgttagaa
cgctgccaggggatctattgttccttcctgcctagaaacccccagtacattaaagcgcaa
aatgtggttaattttccggccaaagccatgcacagctttttaggccattacgaggtactg
gccgatgagattcggcactggcgccgccggggctatgccgtagtattgctggtttcatcc
gaagagcgggccactaacctgctgcagcttttaaaggatgctaaagttgatgcttttcat
ataaaacagcttgataacgaagtgaaagaagggaatgtggtcatcaccgtcggccaattg
gccaacggctttgaactaatctcggcccggctggcagtgattaccgaccaggagatattt
ggccagcggaaaaaggcccgtaagcacagggtaaaagctgactcccggatggagccactg
gctgacttgaaggccggcgactatgtggtgcatgttaaccacggcattgggcgctacctg
ggaatggtttcgctgaacatcggggggctgcaaaaggattatctgcaactgcaatatgct
ggggaagataagctgtatgtgcccactgaccaggtgggcatgctgcaaaaatatttggga
gcggaagcggatcatcccaagttatcccggttgggaggcaccgagtgggccaaggccaag
gccaaagttaaggaagctgtcagggatatggccaaggagcttttggagctgtacgctgcc
cggcaaacagttaaaggtcatgccttttccccggacactccctggcaggcggaatttgag
gcccagttcccctatgaggaaaccccggaccaactcagggccatcgccgaagtcaagcgg
gatatggaaaaagagcggcccatggaccggttgttatgtggtgatgtggggtacggcaaa
accgaggtggccctacgggccgcttttaaagccgtgatggataacaaacaggtggcagtg
ttagtacccaccaccattttagcccagcagcactacaatacctttcgggagcgttttgcc
aactatcccatccggatagagatgctctcgcgttttcgcacgcccaaagagcagcgccag
gtgctggcaggtcttgccaccggggaagtggatgtggtcatcggaacccaccgcctggtg
caggacgatgttattttcaaagatctgggactgctggtggtggatgaagaacagcgtttc
ggggtggcccataaggaaagattaaaacaaatgagaaaaaatgtggatgtattaaccctg
accgccacccctattccccgtacattgcatatgtccctggtgggagtacgggataccagt
gtattggaaacgccgccggaggaacgattcccggtccaaacttacgttttagaagaagac
cccaccctgatccgggaggccatccggcgggaattaaaccgcggcggccaggtttatttt
gtgcacaaccgggtgatggatttggatcggctggccggttggctgcaggatttagtgccg
gaagcccgcattgccgtggcccacgggcagatgaaggaagatgaactggagcaaatcatg
ttggagtttatggatggtgcctacgatgtgctggtgtgtaccaccattgtggaaaccggt
ctggatatttccaacgtcaacaccttgattgtcaaggacgccgatcactttggtttatcc
cagttataccagctgcgggggcgggttggtcgcaccaatcgtttagcctatgcctacttc
ctgtttaggcgggataaggtcctcactgaggtcagcgagcggcggctttctgccattcgt
gagttcactgagtttggttccggctttaaaatcgccatgcgggatttggaaatccgtggc
gccggaaatattttaggggctgagcagcacgggcatattgccgaagtgggctttgatctt
tattgtcgcttgttggaagaggcagtgcacgaggcccggggagaaaaagtggaacagccg
gtggacaccgccgtggaactgccggtggaggcctatattcctgatcaatacgtacccgat
ggaaaccaaaaggtagaactttaccggcggctggccggtatgcgggagctttctgaaata
gccgacatggaggaagaactggtggaccgctttggggatttaccggaaagcgtacaaaac
ctattgaaagtgaccgcattaaaaatcctgggcagccagctaaagattaaaagtattagc
cgtggtcagggctactaccgcctgttatttgccccggaggcacctttggacggggagaaa
ctggtggccatcagcgaaaaatataaatacaatgtaaaattcaataactccacggaaggg
tttgagattaaactggccagtaaggataagggaaccgtgagcctgagaaaattagaacaa
ttagagacatttttaggccggctaaaataa
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