Dermochelys coriacea (leatherback sea turtle): 119848185
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Entry
119848185 CDS
T09064
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc03013
Nucleocytoplasmic transport
dcc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119848185 (UPF1)
03015 mRNA surveillance pathway
119848185 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcc03019
]
119848185 (UPF1)
Enzymes [BR:
dcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119848185 (UPF1)
5.6.2.5 RNA 5'-3' helicase
119848185 (UPF1)
Messenger RNA biogenesis [BR:
dcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119848185 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
119848185 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
119848185
NCBI-ProteinID:
XP_038239551
LinkDB
All DBs
Position
25:complement(14404022..14432626)
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AA seq
1116 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPAHGGPGQGPP
GQGPPGQIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSY
CGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKI
PSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLR
YKGDLAPLWKGIGHVIKVPDSSSDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDR
MQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTV
LQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVV
RLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTA
ERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGD
HCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQ
NGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLK
AGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCV
RANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGP
LNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNVYFQT
HDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQK
NRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSY
LGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagactctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccagaccccgcccgggcccgcacacgggggcccggggcagggcccgccg
gggcaggggccgcccggacagatcgaggcacaggttaatggtcctgacgggatcctccag
aatggtgcagtggatgataatgtagctaaaaccagccaactgcttgcagaattaaacttt
gaagaagatgaagaagatacctattacaccaaggatcttcctgtgcacgcttgcagttac
tgtggtatccatgacccagcttgtgtggtttattgcaataccagcaagaagtggttctgt
aatgggcgtggaaatacatctggcagccacattgtaaatcatctcgtgagagcaaagtgt
aaagaggtgactcttcacaaagatggccctttgggagagactgtcttggagtgttataat
tgtggatgtcgtaatgtgttcctccttggcttcattccggctaaggctgactcggtagtt
gtattactatgcaggcaaccgtgtgccagtcagagcagtttaaaggatattaattgggac
agctcacagtggcaacctcttatccaagaccgctgtttcctttcctggctggtaaagatt
ccttctgaacaggagcagttgagagcacgtcagattacagctcaacaaattaacaaactg
gaagaactctggaaggaaaatccatctgcaaccctggaagacttggaaaaacctggtgtt
gatgaagaaccgcagcatgtcttacttagatatgaggatgcttatcagtaccaaaatatt
tttggacctctagtcaagcttgaagcagattatgacaagaaactcaaggagtcccagacc
caagataacatcacggtgagatgggacctgggcttgaacaagaagagaattgcttacttc
actttgccaaagactgactcagatatgcgtcttatgcagggagacgaaatctgcctgaga
tataaaggagacctggcccctttgtggaaaggaattggtcatgttattaaagttcctgat
agctcttcagattatggtgatgagatagctattgagctgaggagcagtgttggagcacct
gtggaggttactcataacttccaagtggattttgtgtggaagtccacttcatttgacaga
atgcagagtgctttaaaaacatttgccgtggatgaaacttcagtttctggctacatctac
cacaaactgttaggtcatgaggtagaagatgtgattattaaatgccagctgccaaagcgt
tttacagcacaaggacttcctgacctcaaccattctcaggtttatgcagtaaagactgtc
ttgcagcgtcctctgagccttatccaaggtcccccgggtacaggaaaaactgtgacatca
gccactattgtctaccatttagctaggcagggcaatgggcctgtgttagtttgtgcccca
agtaacatagctgtggatcagctcactgagaagatccatcagacaggactaaaagtcgtt
cgtctatgtgctaaaagccgcgaggcaattgattctcctgtatctttcctggcattgcac
aaccagatcagaaacatggatagtatgcctgagctccagaaactgcagcagctgaaagat
gaaactggagaattgtcatctgctgatgagaaacgctatcgtgctctgaaacgaacagca
gagcgtgaattacttatgaatgcagatgttatttgctgcacatgtgtgggagcaggtgac
ccaagacttgcaaaaatgcagtttcgttccattttaattgatgaaagcacacaggctact
gaaccagaatgtatggtgccagttgttctgggagccaaacagctgatccttgtaggtgat
cactgccagcttggtcctgttgtgatgtgtaaaaaagctgcaaaggcaggcctgtctcag
tccctttttgagaggcttgtggtgctgggtatccgtccaattcgcctgcaagtgcagtat
cgtatgcaccctgcacttagtgcttttccatccaacatcttttatgaggggtcactccag
aatggtgttactgcagcggaccgtgtgaaaaagggatttgatttccaatggccccagcca
gataagccaatgtttttctatgtgacacagggtcaagaagaaattgccagttcaggcacc
tcttacttaaacaggacggaagctgctaatgtggagaagataactacaaagttactgaaa
gcgggtgccaaacctgatcagattggcattattactccctatgagggtcagcgctcttac
ctggtgcagtatatgcagttcagcggttccttgcatacaaaactctatcaggaggtggaa
attgcaagtgttgatgctttccaaggacgagagaaggactttattatcctttcttgtgta
agagccaatgagcaccaaggaattggatttttaaatgatcccagacgtcttaatgtggct
ctcaccagagcaagatatggagtaattattgttgggaacccaaaagctctgtctaaacaa
ccactttggaatcacttgctgaactactacaaggagcagaaggtactcgtagagggacca
ctaaacaatctccgagaaagccttatgcagttcagcaagccccgtaaacttgtcaatacc
atcaacccaggtgcccgtttcatgactactgccatgtatgatgcacgtgaagctattatt
ccaggatctgtctatgaccggagcagtcaaggccgcccatcgaacgtgtacttccaaaca
catgatcagattgggatgattagtgctggacccagccatgtcactgctatgaacattcct
atccctttcaaccttgtgatgccaccaatgccaccaccaggatattttgggcaggctaat
ggaccggctgcaggacgtgggacacctaaaggaaagactggtcgtggtgggcgccagaaa
aatcgttttgggattcctggaactagccagtcaaaccttccaaacagtcaagcaagccaa
gatgtggtgtcccagccattctcccagggtccactgactcagggttatatctccatgagt
cagccatcacagatgagccagccaggactctcccagccagaattatcacaggacagttac
cttggggatgagtttaaatctcagattgatgtggcgctgtcgcaggactctacttaccag
ggtgaacgtgcatatcaacatggtggagtgacaggactgtcacagtattag
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