Dermochelys coriacea (leatherback sea turtle): 119849625
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Entry
119849625 CDS
T09064
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
119849625 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcc03400
]
119849625 (LIG4)
Enzymes [BR:
dcc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119849625 (LIG4)
DNA repair and recombination proteins [BR:
dcc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
119849625 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
RNA_ligase
RTT107_BRCT_5
Ribosomal_S5_C
Motif
Other DBs
NCBI-GeneID:
119849625
NCBI-ProteinID:
XP_038242528
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All DBs
Position
1:complement(106641137..106649762)
Genome browser
AA seq
913 aa
AA seq
DB search
MSSTPTSQSSPKQTVASVVPFADLCSILERIQKCKSRPEKTKYFKEFLDSWRKFHDALHK
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKEGKDALKLLNYRTP
ADSHGDAGDFAMIAYFVLKPRCPKQGRLTIQQVNELLDSVASNNAAKRKDLVKKNLLQLI
TQSSALEQKWLIRMIIKDLKLGVSQQTIFSLFHPDATELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIANVQQIEKQMNHQSFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKNNIQNCILDGEMMAYNPNTETFMQKGNKFDIKRMV
DDSDLQTCFCVFEVLMVNDQKLGHEILSKRYEILNELFTPITGRIHIVHKTQASTRKEVV
DALNEAIDNREEGIMIKDPMSIYKPDKRGEGWLKIKPEYVNGLMDELDLLIIGGYWGKGL
RGGMMSHFLCAVAETSPPGEKPSVFHSICRVGSGYTMKELYDLGLKLAKHWKPYRKRDPP
CNILCGTEKPEVYIEPCNSVLVQIKAAEIVTSDMYKTDCTLRFPRIEKIREDKEWHECMT
LDFLEQLRGKASGKLASKHLDMGDDEPQEKKRKTVPKVKKIIGIMDHFKAPDLSNVNKIS
NIFEDIEFCVMTGTENHSKSELESKIAESGGNVVQNPGPDTYCVIAGIENVRVKNIISSN
KHDVVRAEWLLQCFEMKIFVPWQPAFMIHMSPDTKEHFACEYDRYGDSYTADTEVTQLKE
VFSRINNKNDEQMPHDMIADLEERYLWNSSPLSMFRQNTIYLDLYAVVNDPTTKTHGTML
SSRALELRFHGAEIVSQLKEGVSHVIMGDDHTHVKEIKTLRRTFEKKFKILSERWVTDSI
KEGKLQNENPYLI
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccacacctacttcacaatcttcccctaaacaaacagtggcatcagtagttcct
tttgcagatctgtgttcaattttagaacgaatacagaaatgtaaatcccggccagagaaa
accaagtattttaaggaatttttagattcatggaggaaatttcatgatgctcttcataaa
aaagagaaagatgtcacagactctttttatccagcaatgcgacttattcttccgcaattg
gaaagagagagaatggcttatggaattaaagaaaccatgcttgctaagctctatattgaa
ctactcaatttacccaaagaaggaaaagatgccctaaaacttttaaattatagaacacct
gctgactcacatggagatgctggagactttgcaatgattgcctattttgtattgaaaccg
aggtgcccaaaacaaggcagactgaccatacaacaggtgaatgagctgctggattcagtt
gctagtaataatgctgccaaaaggaaggacctagtaaagaaaaatcttcttcagttaata
actcagagctcagcacttgaacaaaaatggctgatccggatgattataaaggatctaaaa
cttggtgttagtcagcaaaccatattttcccttttccatccagatgctactgagttacac
aatgtcacaactgacctggagaaagtttgcagacaactgcatgacccttctgtatcactc
agcgatgtttccatcatgttgttttctgcctttaaacctatgctagctgctattgctaat
gtccagcaaattgagaaacaaatgaatcaccagagtttctacatagaaactaaactagat
ggtgaacgtatgcagatgcacaaagatggagatgtatacaagtatttctcccgtaatggg
tttgattatactcagcagtttggtgcttctcccctcgaaggttcattaactccatttatt
cataatgtgtttaaaaataatatacaaaactgcattcttgatggtgaaatgatggcttac
aatcccaatacagaaactttcatgcagaagggaaacaaatttgacataaaaagaatggtg
gatgattctgatctgcagacatgcttttgtgtgtttgaggtattaatggttaatgatcaa
aagttgggtcacgagatactaagcaaaagatatgagattctaaatgagctgtttacacca
ataacaggcagaatacacatagtgcataaaacacaggctagcaccaggaaagaagtagtt
gatgctctaaatgaagcaatagataacagagaagaaggaatcatgataaaagatcctatg
tccatttacaaaccagacaaacgtggggaaggctggttaaaaatcaaaccagagtatgtc
aatgggctcatggatgaactagatctattaattattggtggttactggggaaaaggtttg
cgtggtggcatgatgtctcattttttgtgtgctgttgctgagacttcccctcctggtgaa
aaaccatctgtttttcattctatttgtcgtgttggttctggttacactatgaaggagcta
tacgatcttggtttgaaattggccaaacactggaagccttaccgtaaaagagatcctcct
tgtaatattttgtgtggaactgagaagcctgaagtctacatcgagccttgtaactcagtc
ctagttcagattaaggcagcggagattgttactagtgatatgtacaaaactgattgcact
ttgcgattccctcgaattgagaaaataagagaggacaaagagtggcatgaatgtatgact
ttggatttcttagaacagctcagaggtaaagcatcagggaagctagcatctaagcacctt
gatatgggtgatgatgaaccacaagaaaagaaacggaaaactgtaccaaaggttaagaaa
ataattggaataatggatcattttaaagcccctgatctttctaatgtaaataagatttct
aatatatttgaagatattgagttttgtgttatgactggaacagaaaaccattcaaaatct
gaactggaaagtaaaattgcagaaagtggtggtaatgtagtacaaaaccctggaccagac
acttactgtgttattgcaggaattgagaatgtcagagtaaaaaatattatatcttccaac
aagcatgatgttgtgagagcagagtggcttttacagtgttttgaaatgaaaatatttgta
ccatggcagcctgccttcatgattcacatgtctccagacacaaaagaacattttgcatgc
gagtatgatcgttatggtgacagctacacagcagatacagaggtgacccaactaaaggaa
gtattctcaagaattaataataaaaatgatgagcagatgcctcatgacatgattgctgac
ttagaagaacgttatctgtggaatagctctccactcagtatgttcaggcaaaataccatt
tatctggacctttatgctgtagttaatgaccccactaccaagacccatggaacaatgcta
tcaagtagagctttggagctccgttttcatggagcagaaatagtctcgcagctaaaggag
ggtgtgtcccatgtaattatgggagacgatcatacccatgtaaaagagattaaaacactt
cggagaacatttgagaaaaaatttaaaatcctatctgagcggtgggtaacagattcaata
aaggaggggaagttacagaatgaaaatccatacctaatttaa
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