Denitrificimonas caeni: O6P33_06095
Help
Entry
O6P33_06095 CDS
T08709
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dce
Denitrificimonas caeni
Pathway
dce03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
O6P33_06095 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dce03400
]
O6P33_06095 (mfd)
Enzymes [BR:
dce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
O6P33_06095 (mfd)
DNA repair and recombination proteins [BR:
dce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
O6P33_06095 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
WBE26391
LinkDB
All DBs
Position
complement(1277948..1281382)
Genome browser
AA seq
1144 aa
AA seq
DB search
MSVLRFPKLPSKSAKQLWGNLPGAAQGLAIAEATRSAQRFTLLLTDNSQSAERLKEELAF
FAPELPVLHFPDWETLPYDVFSPHQDIISQRVATLYQLPQLQHGILVVPINTALHRLAPK
SFMLDASLMLDVGQKLDVESMRSRLQASGYQCVDTVYEHGEFAVRGALLDLFPMGSDAPY
RIDLFDDEIETLRTFDPETQRSNEKVDSIRLLPAREFPLDKKARGDFRARFRERFDVDFR
RCPLYQDLSGGIIPAGIESYLPLFFEETSSLFDFLPDNAQVFSMLGVDAAAEAFWQDIRS
RYEERRGDIERPLLPPADLFIAINEYYAALKEHPRIVIDPEDVSPGVGRERLPVQAFPDL
AIDARATEPLSKVKEFLAEFSGRSLFTVETAGRREVLLELLQRINVAPVEVASWEDFLTA
DCKIAICVAPIEAGVLLDNIALIPESALLGQRVMQRRRREKNRDANHEHVIRNLTELREG
APVVHIDHGVGRYQGLVTLEIEDQATEFLMLEYADQAKLYVPVANLHLIARYTGSDDSSA
PLHRLGTEQWQKAKRKAAEQVRDVAAELLNIYAIRAAREGFAFSNPGLDYATFSAAFPFE
ETPDQQVAIDNVRNDMLSGKPMDRLICGDVGFGKTEVAMRAAFIAVHSGKQVAVLVPTTL
LAQQHYNSFRDRFADWPVQVEVMSRFKTGKEISQAVSNVADGKVDILIGTHKLLQDDVKF
NNLGLVIIDEEHRFGVRQKEKLKALRSEVDILTLTATPIPRTLNMAFAGMRDMSIIATPP
ARRLSVRTFVMQRQDAVVKEALLRELLRGGQVYFLHNDVKTIEKCAADLAALVPEARIGI
GHGQMHERELEQVMADFYHNRYNVLVASTIIETGIDIPNANTIVIDRADKFGLAQLHQLR
GRVGRSHHQAYAYLLTPPAKSMTSDAKKRLEAISHAQDLGAGFMLATHDLEIRGAGELLG
DGQSGEIQAIGFTLYMEMLERAVESIRKGEQPNLEQPLDSGTEINLRVPALIPDEYLPDV
HARLILYKRIASAQNTTDLKDLQVEMIDRFGLLPDPAKHLIRVTELKLKAQALGILKIDA
GPHAGRLEFAGDTCVDPMRLIKLIQSQPKHYRFEGATVFKFNVPMDNPEQRFATIEALLA
QLAP
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgtattgcgctttcctaaactgccatctaaatccgccaaacagctctggggcaac
cttcccggcgctgctcaggggcttgccattgctgaagccacacgcagtgcgcagcgtttt
actttgctcctaactgacaacagccagagcgctgagcgcctcaaagaagagctggctttt
tttgctccagagctgccagttttgcacttccctgactgggaaaccttgccctatgacgtg
ttttctccgcatcaggacattatttctcagcgagtcgccaccctctaccagttaccgcaa
ctgcagcatggcattttagtggtccccatcaataccgccctacaccgcttagcgcccaag
tcatttatgctggatgccagcctgatgctcgatgttggccaaaagcttgacgtggaaagt
atgcgcagccgcttacaggcatccggctatcaatgcgtggacactgtttacgaacatggt
gagtttgccgtacgcggagcgttactggacttattccccatgggcagtgacgcgccctac
cgtattgatttatttgatgatgaaatcgaaacgctgcgcacctttgatccagaaacccag
cgctccaatgagaaggtcgacagcattcgcctgctaccagcccgcgaattccctttagat
aaaaaagcccgtggtgattttcgcgcacgcttccgtgaacgttttgacgtagattttcgt
cgctgcccactgtaccaggacctctctggaggcattattccagcgggaattgaatcctac
ttaccgttattttttgaagaaaccagtagcctgtttgatttcctcccagacaatgctcaa
gttttctcaatgctcggagttgatgccgcagctgaagctttttggcaagatattcgcagc
cgctatgaagagcgccgtggcgatattgaacgcccactgctgccgcctgccgatttattt
attgccatcaatgaatactacgctgcacttaaagaacacccgcgtattgtcattgatcct
gaagacgttagccccggtgtcggccgcgagcgcttgccagtacaagcctttccagattta
gccattgacgcccgcgccactgagccgctgagcaaggttaaagagtttttagccgaattt
tctggccgcagcttatttaccgtagagaccgccggacgccgtgaagttttacttgaacta
ctgcagcgcataaacgtagcccctgtcgaagttgccagctgggaagactttttaaccgca
gactgcaaaattgcgatttgtgtggcacccattgaagccggcgtcctactcgacaatatt
gctttaattcccgaaagcgccttgctcggtcagcgagtgatgcagcgccgtcgccgtgaa
aaaaaccgtgacgccaaccatgagcatgtcatccgcaatctcactgaactgcgcgaaggc
gcaccagtggtgcacattgaccacggtgttggccgctatcaaggcttggtgactttagaa
attgaggatcaagccaccgaatttttaatgctcgaatacgcggatcaagccaagctctat
gtgcccgtggccaatctgcatttaattgcccgctatactggcagcgatgacagcagcgcc
ccactacaccgtttaggcaccgagcaatggcagaaagccaagcgcaaagccgctgagcaa
gtacgcgatgtagcagcagaattgctgaatatttatgccattcgcgcggcccgcgaaggt
tttgcttttagcaatccaggccttgattacgcaacctttagcgcggccttcccttttgag
gaaaccccagatcagcaagtggccatcgacaatgtgcgcaatgacatgctctctggcaaa
cccatggatcgcttaatttgtggtgatgtgggctttggtaaaaccgaagtggccatgcgc
gcagcctttattgccgtacacagcggtaagcaggtggccgttttagtacccaccaccctg
ctcgcgcaacaacactacaacagtttccgtgaccgcttcgccgattggccagtgcaggtc
gaggttatgagccgcttcaaaaccggcaaagaaatcagccaagcagtgagtaacgtcgct
gatggcaaagtcgacattttaattggcacgcacaaactgctgcaagatgacgtgaagttt
aataatttaggcttagttattattgatgaagaacaccgttttggtgtgcgtcagaaagag
aagctaaaagctctgcgcagcgaagtggatattctcaccctcactgccacaccgattccg
cgcaccctgaatatggcctttgccggcatgcgcgacatgtcaattattgccacaccgcca
gcacggcgcttatcggtgcgcacttttgttatgcaacgccaagatgcggtggtgaaagaa
gccttgctgcgtgagttactgcgcggtggtcaagtgtatttcttacacaacgatgttaaa
accatcgagaaatgcgctgccgacttagccgctttagtacccgaggcgcgtatcggcatt
ggccacggacaaatgcatgagcgcgaactggaacaggtgatggccgacttctaccacaat
cgctacaacgtattagtggcctcaaccattattgaaaccggtattgatatccctaacgcc
aacaccattgtgattgatcgcgcagacaagtttggcttggcccaattacaccaattacgc
ggacgggtgggacgcagccaccaccaagcctatgcttacttactaaccccaccagccaaa
agcatgaccagcgatgcgaaaaaacgccttgaagccatcagtcatgcacaagacttaggc
gcaggctttatgctcgccactcacgacttagaaatccgcggcgccggtgaactattgggt
gacggccaaagtggtgagatccaagccattggtttcaccttatatatggaaatgctcgaa
cgcgccgtggaatccattcgcaaaggcgagcaacccaaccttgagcaaccactggacagc
ggtactgaaatcaacttacgggtgcctgcgctgatccccgacgagtatttacctgatgtg
cacgcacgtttgattctctataagcgcattgcctcagcacaaaacactacggacttaaaa
gacttacaagtggagatgattgaccgtttcggtttattacccgatccagccaaacactta
attcgtgttaccgaactcaagctcaaagcacaagcactgggtattctcaaaatcgatgca
ggcccgcacgctgggcgtttagaatttgccggcgatacctgtgttgatccaatgcgcctc
attaaactgattcaaagtcagcccaagcactaccgctttgaaggcgctaccgtctttaag
tttaatgtgccgatggataatcctgagcagcgttttgctacaatcgaagccttgctggca
caactggcgccataa
DBGET
integrated database retrieval system
