Dermatophilus congolensis: SAMEA4475696_2187
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Entry
SAMEA4475696_2187 CDS
T05038
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dco
Dermatophilus congolensis
Pathway
dco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAMEA4475696_2187 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dco03400
]
SAMEA4475696_2187 (mfd)
Enzymes [BR:
dco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMEA4475696_2187 (mfd)
DNA repair and recombination proteins [BR:
dco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SAMEA4475696_2187 (mfd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
SNV25124
UniProt:
A0A239VU51
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All DBs
Position
1:complement(2430906..2434553)
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AA seq
1215 aa
AA seq
DB search
MTLTAVVDHLRRDRGVTQALEAFTQGEPFVDITIAPGARPALLAALAHAPERTGPLVAVT
ATTRAANDLNDALHAYLPNASITQFPSWETLPHERLSPRSDTVGTRLSVLRRLENPDPDG
PHGPIDIVIVPIRSLLQPIATGLANLAPVYLHWGEGRPLTDVVDALTAAAYTRTDLVERR
GEFAVRGGVLDVFPPTEQHPIRIEFFGDEIEDLRYFKVADQRSFPAVSDAARPAAIKAGM
VPAHLWAPPCRELLLTDTVKQRALDLANKLPGITDMVEKIAEGIGVEGMESLTPALVDGM
ETFLDVLHRVGGAHILLLDPEKIRTRAHDLVATSEEFLDASWSSASGGGNAPIDLRGILD
QASYHSLAHTRTAAQHANIPWWTLTSFTNDPDTATTVEDNFGDDANTTYLRTDTHETPDY
HGDIPKATTDLATWTHENKLIVVTTAGKGLAERLSEVLTNADIPVHIDASGTDNRTGLVH
VTKADITEGFTAPSAGIVLISETDLISGKGRRATGGTTKDMRKMPSRRRRQVDPLSLKPG
DHVVHEQHGVGRFIEMTQRTVQGATREYLLIEYAPSKRGGPADRLFVPTDQLDQVTAYVG
NDAPNLNKLGGSDWSKTKTRAKKHVKQIAGELVRLYSARMATKGHAFGPDTPWQRELEDA
FAYVETPDQLSSIDEVKDDMEKEIPMDRLISGDVGYGKTEIAVRAAFKAIQDGKQVAVLV
PTTLLVQQHFQTFTERYAQFPVNVKALSRFQNKKESDETIAGLADGKVDLVIGTHRLLSS
TVRFKDLGLVIIDEEQRFGVEHKEQLKAMRTNVDVLAMSATPIPRTLEMAVTGIREMSTL
ATPPEERHPVLTFVGPYNDKQVAAAIRRELLREGQVFYVHNRVSDIEKVAAHIRELVPEA
RVETAHGQMGEARLEKVVVDFWEKEFDVLVCTTIVETGLDISNANTLILDRADNFGLSQL
HQLRGRVGRGRERAYAYFMYPTGKPLTETAHDRLATIAANTDLGAGMQVAMKDLEMRGAG
NLLGGEQAGHIDGVGFDLYVRLVGEAVAEFKTGEMDEAPREVKIELPVDAHIPHNYVAEE
RLRLEAYKRLAAVTDDIELTALIEEIVDRYGPYPEPVANLIEVAKLRTVAKRAGISDIGI
QGNMIRFGPVDLKDSQQLRLTRMYKGTTIKAAVRQILVRRPMTAPIGGTPLKNKEILAWT
TELIQQIFLDAPTSR
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgaccctcaccgccgtcgtagaccacctccgccgagaccgaggagtcacccaagcactc
gaagccttcacccaaggcgaacccttcgtcgatatcaccatcgcccccggtgcacgcccc
gccctcctggcggccctcgcccacgcccctgaacgcactggcccactcgtagccgtcacc
gccaccacccgcgccgccaacgacctcaacgacgccctccatgcctacctgcccaacgca
tccatcacccaattccccagctgggaaacccttccccacgaacgactcagcccccgaagc
gacaccgtaggcacccgactctccgtactgcgccgcctcgaaaaccccgaccccgacggt
ccccacggccctatcgacatcgtcatcgtccccatccgatccctcctgcaacccatcgct
accggcctggccaacctcgcccccgtctacctccactggggagaaggacgccccctcacc
gacgtcgtcgacgcccttaccgccgccgcctacacccgcactgacctcgttgaacgacgc
ggcgaattcgccgttcgcggaggcgttctcgacgtcttcccacccaccgaacaacacccc
atccgcatcgaattcttcggcgacgaaatcgaagacttgcgctacttcaaagtcgccgac
caacgcagcttccccgccgtcagtgacgcagcccgccccgccgccatcaaagcaggcatg
gtccccgcccacctatgggcaccgccctgccgcgaactcctcctgaccgacaccgtcaaa
caacgcgccctagacctagccaacaaactccccggcatcaccgacatggtcgaaaaaatc
gccgaaggcatcggcgtcgaaggcatggaatccctcacccccgccctcgttgacggcatg
gaaaccttcctcgatgtcctccaccgcgtcggcggagcccacatcctcctgctcgacccc
gaaaaaatccgcacccgcgcccatgacctcgtcgccaccagcgaagaattcctcgacgcc
agctggtcatcagcatcaggcggcggcaacgcccccatcgacctgcgcggcatactcgac
caagccagctaccactccctagcccacacccgcaccgccgcacagcacgccaacatcccc
tggtggaccctcacctccttcaccaacgaccccgacaccgccactaccgtcgaagacaac
tttggcgacgacgccaacaccacctacctacgcactgacacccacgaaacccccgactac
cacggcgacatacccaaagccacaacagacctcgccacctggacccacgaaaacaaactc
atcgtcgtcaccaccgcaggcaaaggcctagccgaacgactctccgaagtcctcaccaac
gcagacatccccgtccacatcgacgcctccggaaccgacaaccgcaccggcctagtccac
gtcaccaaagcagacatcaccgaaggcttcactgcacccagcgccggcatcgtcctcatc
agcgaaacagacctcatcagcggcaaagggcgccgcgccaccggcggcaccaccaaagac
atgcgcaaaatgccctcccgacgccgccgccaagtcgaccccctctcccttaaacccggc
gaccacgtcgtccacgaacaacacggcgtcggacgattcattgaaatgacccaacgcacc
gtccaaggcgcaacccgcgaatacctcctcatcgaatacgcacccagcaaacgcggcggc
cccgcagaccgcctcttcgtacccaccgaccaactcgaccaagtgaccgcctatgtcggc
aacgacgcacccaacctcaacaaactcggcggctcagactggagcaaaaccaaaacccgc
gccaaaaagcacgtcaaacaaatcgccggagaactcgtccgtctctacagcgcccgcatg
gcaaccaaaggccacgccttcggcccagacaccccctggcaacgcgaactcgaagacgcc
ttcgcctacgtcgaaacccccgaccaactctccagcatcgacgaagtcaaagacgacatg
gaaaaagaaatccccatggaccgtctcatctccggcgacgtcggctacggaaaaaccgaa
atcgcagtccgcgccgccttcaaagccatccaggacggcaaacaagtcgccgtcctcgta
cccaccaccctcctagtccaacaacacttccaaaccttcaccgagcgctacgcccaattc
cccgtcaacgtcaaagcactttcccgattccaaaacaaaaaagagtccgacgaaaccatc
gccggactcgccgacggaaaagtcgacctcgtcatcggaactcaccgactcctctcctcc
accgtgcgcttcaaagacctcggcctcgtcatcatcgacgaagaacaacgcttcggcgtc
gaacacaaagaacaactcaaagccatgcgcaccaacgtcgacgtcctagccatgtccgcc
acccccatcccacgcaccctcgaaatggccgtcaccggaatccgcgaaatgagcaccctc
gcaaccccacccgaagaacgccaccccgtgctcaccttcgtcggcccctacaacgacaaa
caagtcgccgcagctatccgccgcgaactcctgcgcgaaggccaagtcttctacgtccac
aacagagtctctgacatcgaaaaagtcgcagcccacatccgcgaactcgtccccgaagcc
agagtcgaaaccgcccacggccaaatgggcgaagcacgactagaaaaagtcgtcgtcgac
ttctgggaaaaagaattcgacgtcctcgtctgcaccaccatcgtcgaaaccggactcgac
atctccaacgccaacacactcatcctcgaccgcgccgacaacttcgggctctcccaactc
caccaactccgcggacgcgtcggacgaggccgcgaacgcgcctacgcctacttcatgtac
cccaccggcaaacccctcaccgaaaccgcccacgaccgactcgccaccatcgccgcaaac
accgacctcggcgccggcatgcaagtagccatgaaagacctcgaaatgcgaggagcagga
aacctcctcggcggtgaacaagccggacatatcgacggcgtcggatttgacctctacgtc
agactcgtcggagaagcagttgccgaattcaaaaccggcgaaatggacgaagccccccgc
gaagtcaaaatcgaactacccgtcgacgcccacataccccacaactacgtcgccgaagaa
cgcctacgcctcgaagcctacaaacgcctcgccgccgtcaccgacgacatcgaactcacg
gcactcatcgaagaaattgttgaccgctacggcccctaccccgaacccgtcgcaaacctc
atcgaagtcgccaaactccgcaccgtcgccaaacgcgccggaatcagcgacatcggcatc
caaggcaacatgatccgattcggccccgtcgacctcaaagacagccaacaactccgcctc
acccgcatgtacaaaggcaccaccatcaaagcagccgtccgacaaatcctcgtccgacgc
cccatgactgcacccatcggaggaacgcccctcaaaaacaaagaaatcctcgcctggacc
accgaactcattcagcaaatcttcctcgacgcccccactagccgctaa
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