Daucus carota (carrot): 108196143
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Entry
108196143 CDS
T05350
Name
(RefSeq) DNA ligase 6 isoform X1
Organism
dcr
Daucus carota (carrot)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DRMBL
DNA_ligase_A_C
Lactamase_B_2
UBA_4
RMMBL
Motif
Other DBs
NCBI-GeneID:
108196143
NCBI-ProteinID:
XP_017218765
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All DBs
Position
7:31492528..31505618
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AA seq
1401 aa
AA seq
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MASKTLTLDSSSLFLNSLNSTPSPLTPFPTDFPQSKRIPNSRFIVDGFRHAGDHSVSYFL
SHFHSDHYTGLSPNWSKGIIYCSQITARLLVEVLKVPAAFVVSLPMSEIVVVDDCEVRLV
DANHCPGAVQFLFKVRVSDGGFERYVHTGDFRYCDDMKLDDALCEFVGADVVYLDTTYCN
PKFVFPVQDESVDYIVEAINRIGVENVDKSKSVLFLVATYVIGKERILVEIARRCNRKIH
VDRRKMDILGVLGFGEDEVFTEDESESDVHVVGWNVLGETWPYFRPNFVMMNEIMAAKGY
SKVVGFVPTGWTYEVKRNKFAVRTKDSFEIHLVPYSEHSNYEELREYVKFLKPKRVIPTV
GVDVEKLDSKHALAMQKHFAGLVDEMAVKQDFLKSFHRGARNSSDKPTNVNTAGIEEKDL
ASDEVQTFENIDSELHDQAPVPQDILLVNDNDIEELVQELHDCLPAWVTRDQMLDLLQSS
NKDVVEAVSYFYEHEIEFHEQAAASTSSLCKSQPGSESDSLFPLTPDTKAHDTRAEKSPL
SLRFNSLGTKPAIKHDISPAKKKRNIKNKPSKRARTGSSKEATVPTQHTITKFFSKLVCP
DPGADKLVNVCAKSDEENIMSQMDCPSPYKEELEQFMQIVDGSPSLRNYASHILDKSKGD
ISKALDIYYSDRDCSLDENKGKLTESSKSGTVQNHTGCCSSVQAPKETENLLKMDDVSAV
IQPLNKAVSLVPEKDKVHISPREQPTDVASCLVSLPPQDYSPIEHACWKGGQPAPYLHLA
RTFDLVEEEKGKIKATLMLCNMFRSLLALSPEDVLPAVYLCTNKIAPDHENMELNIGGSI
IVSALEETCGANKSKIRTMYNNLGDLGDVAQLCRQTQSLLATPAPLSIRGVFQALHKISI
QTGNGSTSRKKGLIMNLMRSCREKEMKYLVRTLVRNLRIGAMMRTVLPALAQAVAMSSSP
AERSTENTKQQYQALSAVVLEAYNVLPNLDLLIPSLMDHGIKFSSTTLSMVPGTPIKPML
AKITNGIPQVLKLFSCKAFSCEYKYDGQRAQIHKLGDGSVRVFSRNGDETTSRFPDLVNI
IKESCSSEASSFVLDAEVVAVDRKNGCKLMSFQELSSRERGGKDSLIAVDNIKVDICVFA
FDIMFANGEQLLSIPLRQRQTYLKKLFGNERAGYFEYARGLIVEADDAVMTNDETLTKMN
SFLDDALRSSCEGIMVKSLDVEAGYTPSKRSDTWLKVKRDYVEGLNDTLDLVPIGAWHGN
GRKAGWYSPFLVACYNPDLEEFQSVCRVMSGFSDPFYIEMKEFYSEDKILDKKPPYYQTG
EKPDMWFNPELVWEIRGAEFSISPVHHAAIGLVHPSRGLSIRFPRFVRSRPDRKPEECST
AMDIAEMFNSQTRKMDVNVAE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaaaaccctaaccctagactcctcatctctcttcctcaattcactcaattcc
actccatcacccctcactccattccccacagacttcccccaatcaaaacgcatccccaat
tcacgtttcatcgtcgatggcttccgacacgccggcgatcactccgtttcctacttcctc
tcccacttccactccgatcactacaccggcctctctcccaattggtccaaaggcatcatc
tactgctctcaaatcaccgctcgtcttctcgtcgaagtgctgaaagttccggctgctttc
gtagtctcgttgccgatgtccgagattgtcgtggtggatgattgtgaagtgaggctggtg
gatgctaatcactgtcccggtgctgtgcagtttttgtttaaggttagggtttcggatggc
ggattcgagaggtatgtgcatactggcgattttcggtattgtgatgatatgaaattagac
gatgcgctgtgtgaatttgttggtgctgatgttgtttatttggatactacatattgtaat
ccgaagtttgtgtttccggtgcaagatgagtctgttgattatattgttgaggctattaat
aggattggtgtggagaatgtggacaagtcgaagtcagttttgtttcttgttgctacttat
gttatcgggaaggagaggattttggttgagattgcgaggaggtgtaataggaaaatacat
gttgataggaggaaaatggatattttgggggttttggggtttggcgaggatgaggtgttt
acggaggatgaatcagagagtgatgttcatgttgttggctggaatgtgttgggtgagact
tggccgtattttcggcctaattttgtaatgatgaatgagattatggctgccaaagggtat
agtaaggtagttggttttgtaccgactggttggacgtatgaagtgaaacgtaataaattt
gctgttaggacaaaggactcgtttgagatacatcttgtaccgtatagtgaacattcaaat
tatgaagagcttagagaatatgtgaagttcttgaaacccaagcgtgttattcccactgtt
ggagtagatgtggagaaacttgacagcaagcatgctcttgcaatgcagaagcattttgct
ggcttggttgatgaaatggccgtcaagcaagatttcctaaagagtttccataggggggca
aggaattcaagtgataagccgacaaatgttaatacagctgggattgaagagaaagattta
gcttctgatgaagtccagactttcgagaatattgattctgaacttcatgatcaagctcct
gttccacaggatattttactagtaaatgataatgatatagaggaattggtacaagaactt
catgattgccttcctgcttgggttacacgagatcagatgttggatctgcttcagagttcc
aataaagatgttgtcgaagcagtttcttacttttacgaacacgaaatcgagtttcatgag
caggctgctgctagtacatcatctctctgtaaatctcagccaggttctgaatccgactct
ttgttccctttgacccctgataccaaggcacatgacactagagctgagaagagtcctttg
agcctgagattcaattcacttggtacaaaacctgcaattaagcatgacatttctcctgcc
aaaaagaaaagaaatataaaaaataaacctagtaaaagagcacggacaggttcaagtaaa
gaagctactgtaccaacacaacacacaattacaaagttcttcagtaagctcgtgtgtcca
gatcccggagctgataaacttgtaaatgtttgtgcaaaatctgatgaagaaaacattatg
tcacaaatggattgcccctcaccatacaaagaggagttggagcaatttatgcaaatagta
gatggcagtccatctttacgaaattatgcttctcacatattagataagtcaaagggagat
attagtaaggcactggacatttattatagtgatcgtgattgtagccttgacgagaataag
ggaaaattgacagagagtagcaaatcaggcacagtccagaatcacactggatgttgctct
tcggtccaagcaccgaaggagacagagaatctgctgaaaatggatgatgtatctgcagtt
atccagccattaaataaagctgtatcactagtacctgaaaaagacaaggttcatatatct
ccccgcgaacaaccaactgatgttgcttcatgtcttgtatcgttaccccctcaggattat
tcaccaatagaacatgcctgctggaaaggtggacaaccagctccatatctacatctcgca
cgaacttttgacttggtcgaggaagaaaagggaaagattaaagctacattaatgctgtgc
aatatgtttaggagtttattggctttgtctcctgaggatgttctacctgctgtttacttg
tgcacaaacaagattgctcctgatcatgaaaacatggaattaaatataggggggagtatt
attgtatcagcacttgaagagacctgtggagcaaataaatctaaaattcggacaatgtac
aataacttgggtgatcttggtgatgttgctcaactttgccgacagacacagtcattgctt
gctactcctgcgccactctcaatccgaggtgtatttcaagcgctccacaagattagtata
caaacaggtaatggaagtactagtcgaaagaaaggcctcatcatgaatcttatgaggtca
tgtagagagaaggaaatgaagtatcttgttagaaccttggttaggaatttacgtattggg
gcaatgatgagaactgttttgccagcattagctcaagctgttgctatgagctcatctcct
gctgaacgatcaactgaaaataccaaacagcaataccaggcactttctgcggtggtactt
gaagcatataatgttcttcccaatttggatttgctcattccttctcttatggaccacgga
attaaattttcgtcaacaaccttgtcaatggttccaggcacaccaatcaaacctatgctt
gcaaaaatcactaatgggatccctcaagtgttaaagctcttttcctgtaaagcattttca
tgtgaatacaaatatgatggtcagagagcacaaattcacaagttaggtgatggatccgtg
cgtgtcttttcacgaaatggggatgaaacaacatcgagatttccagatttagtaaacata
attaaggagtcttgtagctctgaggcttcaagttttgttttggatgcagaggttgttgct
gtagataggaaaaatggatgcaaacttatgtctttccaagaactttcttcccgggagaga
ggtggaaaagattccttaattgctgttgataacataaaggttgacatttgtgtctttgct
tttgatattatgtttgccaacggagagcagcttttgagcattccacttcgtcaacgacaa
acatatttgaagaaactttttggaaatgagagagctggttattttgaatatgcacgagga
ctaattgtggaagctgatgatgctgtcatgaccaatgatgagacactgactaagatgaac
tcttttcttgatgatgctctgcgttcttcttgtgaaggcattatggtcaaatctcttgat
gttgaagctggatatactccatctaagcgttctgatacttggttaaaggttaagcgagat
tacgtagaaggtttgaatgatacccttgatttagttccaattggtgcttggcatgggaat
ggaagaaaggcaggatggtacagtcccttccttgtggcatgctacaatcctgatctcgag
gaatttcagtctgtttgtcgtgtaatgtctgggttttccgatccattctacatagagatg
aaagaattttactcagaagacaagatactagacaagaaaccaccatattatcaaaccgga
gagaagcctgatatgtggttcaacccggagcttgtatgggaaataaggggtgctgagttc
agcatatcaccagttcatcatgctgctatcggcctggtccatccatcacgcggcctttcc
atccgctttcccagatttgttcgctccaggccagatagaaagccagaagagtgtagcaca
gccatggatatagctgaaatgttcaattctcaaaccagaaagatggatgttaatgttgca
gaataa
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