Daucus carota (carrot): 108199326
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Entry
108199326 CDS
T05350
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108199326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108199326
03009 Ribosome biogenesis [BR:
dcr03009
]
108199326
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108199326
Spliceosome [BR:
dcr03041
]
Complex A
U1 snRNP components
U1 related factors
108199326
Complex B
108199326
Ribosome biogenesis [BR:
dcr03009
]
Eukaryotic type
Pre-60S particles
Helicases
108199326
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-GeneID:
108199326
NCBI-ProteinID:
XP_017222588
UniProt:
A0A175YQW4
LinkDB
All DBs
Position
8:complement(28745606..28754073)
Genome browser
AA seq
1166 aa
AA seq
DB search
MATAESAAAADGPRYAPDDPTLPKPWKGLIDGKSGDLYYWNPETNVTQYEKPAALPPPLP
AGPQPVPNTPSLAPIPGARMIQPNGASAQYEQQMAWGSSRGEVPYSSQTDAQHVAQQGAQ
VGSSMQHQGHVTPQHGRTQTMGQPSQQMFPYSDQQKPPQQGNQIAQATHQMPQQMGNQTP
MYQGSNSVEPQNFHYPNQQMQYNAYQPNIPHQDQQRLPQQTQQTQVQQFSYQQEPKAGFS
QRGDTDFQHGRQSGFPASHAKQGGMPIAQSPTSGTNSDSKPLMGVQPGQGTQFGGPSFNM
QQPPLAHQTQSGTDLAYQQHVPRFQNQMGPAMMHGQHSNVPTAGFKKAYEESPPGRVDNE
YFTSVNKAVHGMPPQQPKLAAIPLARNHMDSRMAPPLQNALHAQAIAPNPGPASQDIYNH
ALNVPPYARNPMSGPPSMVMGSPDANNISAAEVYRQKHEITATGDNVPAPFMSFEATRFP
QEILKEIYAAGFTSPTPIQAQTWPIALQNKDIVAVAKTGSGKTLGYLMPAFMLLRHCRNN
PLNGPTVLVLAPTRELATQIQDEVIKFGRASRVSCTCLYGGAPKGLQLKELDRGADIVVA
TPGRLNDILEMKKIDFRQISLLVLDEADRMLDMGFEPQIRKIVNEIPARRQTLMYTATWP
KEVRKIAGDLLVNPVQVNIGKVDELAANKSITQYVEVVPQMEKQRRLEQILMSQERGSKI
IIFCSTKKMCDQLTRIIGRSFGAAAIHGDKSQNDRDWVLNEFRSGKCPILVATDVAARGL
DIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFSEQDWKHAPDLIKVLEGANQ
PVPGEIRDIALRGGPGFGRDRGGMTRPDSAGGRWDSGGRGGMRDGGFPGRGGMRDGGFDG
RGGMRDGGFGGRGGMRDGGFGGRGGMRDGGFGGRGGMRDGNFGDRSGMRDNNFGDRGSMR
DGNFGGRGGARGGGFGGPGGGRGGWDRNDRSGPPDRYNNIDGRGRGRGRGRYDNRSDPAG
RSRDRNYSPSPDRGVRTWIGRGRSRTRSRSRSRSWSRSYSRSRSWSRSRSPRRNRSRSRS
PRRNRSRSRSRSWSPRKERRRESKFDQMEVPVAEARPEPGTSQFPQVPQNMASLGTENVD
QSQVIDSINSDPPMSTFDNSGPAGEP
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggccactgctgagtcagcagcggcagctgatggtcctcgttatgctcctgatgatcct
actctgccgaaaccttggaaaggtttgattgatggaaaatcgggtgatttgtactattgg
aatccggaaactaatgttacacagtatgaaaaacctgctgccttgcctccgccactgcca
gctggtcctcagcctgttcctaatacgcctagtctagcaccaattccaggcgctcgaatg
attcagcctaatggtgcttcagctcagtatgagcagcaaatggcatggggctcatcacga
ggggaagttccttattcatctcaaacagatgctcagcacgttgctcagcagggagcccaa
gtaggatcttccatgcaacaccaggggcatgtaacacctcagcatggtaggacgcaaacg
atggggcagcctagccaacaaatgtttccatactctgatcagcaaaaaccaccccaacaa
ggaaatcagattgcgcaggctacacatcaaatgccacagcagatggggaaccagacacca
atgtatcaaggcagtaattcagtagagccgcaaaattttcattatccgaatcagcaaatg
cagtataatgcatatcagccaaatattccccatcaggatcagcagcgattgccacaacag
actcagcaaacacaggtgcagcaattttcataccaacaagagcccaaagcaggattctca
cagagaggtgatacagatttccaacatggaaggcagagtgggtttcctgcatcacatgct
aaacaaggtggcatgccaattgctcagagtccgacatcaggaaccaactctgattcaaaa
ccgctcatgggcgttcaacctggccaaggcacacagtttggtggcccgtccttcaacatg
caacaacctcctttggctcatcaaacacaaagtggtaccgatttagcttaccagcaacat
gttcctagatttcaaaatcagatgggcccagcaatgatgcatggccagcattctaatgtt
ccaactgctggatttaaaaaggcctatgaagaaagcccgcctgggagagtggacaatgaa
tattttacgagtgtgaataaggctgtgcatggtatgcctcctcagcagcctaagcttgca
gcaattccattggctagaaatcacatggactctaggatggcccctcctcttcaaaatgcc
ttgcatgcccaggccattgcacctaatccaggccctgcatcacaggatatctataatcat
gcacttaatgttcctccatatgcccgtaatcctatgagtggacctccatcaatggtcatg
ggatctcctgatgctaataacatctcagctgctgaagtttaccgtcaaaagcatgaaata
acagcaacgggtgataatgtgccagcgccattcatgtcttttgaagctactcgctttcct
caggaaattttgaaagagatttatgctgcgggtttcacttctccaacacccatccaagct
cagacatggcctatagcactacaaaacaaggacatagttgctgttgccaaaactggatct
ggtaaaacactggggtatctgatgcctgcctttatgcttcttagacattgccgtaacaat
cctctgaatggtccaacggtgttggtcttggctccaacacgcgagcttgccacccaaata
caagatgaagttatcaagtttggcagggcgtcccgggtctcttgcacatgtttatacggc
ggagcaccgaaggggctgcagttgaaagaattagatcgtggagctgatattgttgtggcg
actcctggccggcttaatgacatccttgaaatgaaaaaaattgattttagacagatatcc
cttctagttcttgatgaggcagatcgcatgctggatatgggttttgaacctcaaattcgt
aaaattgtaaatgagattccagcgcgccgacaaactctcatgtatacagcaacttggccc
aaggaagtacgaaaaatagctggtgaccttcttgttaatcctgttcaggttaacattgga
aaggttgatgagcttgctgcaaataagtccataactcagtatgttgaagtagttccccaa
atggaaaagcagaggcgtctagagcaaattctcatgtcccaagaacggggttctaagatt
atcatattttgttccacaaagaaaatgtgcgaccagcttactcgcattattggtcgtagc
tttggagctgctgcaattcatggggacaaatctcagaatgatagagattgggttttgaat
gaattccggtctggaaagtgcccaattttagtagctactgatgttgctgcacgagggctt
gatataaaagacataagggtagtggtcaactatgactttcctacgggagttgaggattac
gttcatcgaattggacgaactgggagggctggggctacaggggtggcatataccttcttc
tctgagcaggactggaaacatgctcctgaccttataaaagtcctggagggagctaaccag
cccgtacctggtgaaattcgagatatagctctgcgcgggggaccaggctttgggagggat
cgaggtgggatgactcgtccggattctgctggtggccgctgggattctggtgggcgtggt
ggcatgagggatggaggatttcctggccgtggcggcatgagagacgggggctttgatggt
cgtggcgggatgagggatgggggattcggtggccgaggtgggatgagggatgggggattt
ggtggtaggggtggaatgagggatgggggatttggtggtaggggtggaatgagagatggc
aattttggtgaccgcagtggtatgagggataacaattttggtgatcgtggcagtatgagg
gacggcaactttggtggtcgaggtggagctaggggtgggggatttggtggtcctggtggc
ggtcgtgggggctgggataggaatgaccgtagtggtcctcctgatcgatacaacaacata
gatggtcgcggaagaggcaggggtagggggcgttatgacaacagaagtgaccctgcaggt
cgaagccgtgacagaaattatagccccagtccagatagaggcgtccgaacatggatcggc
cgtggaaggagcaggactaggagcaggagtcgtagcaggagctggagcaggagttatagc
agaagccggagctggagccgcagccggagtcctaggcgcaaccggagccgaagcaggagt
ccaagacgcaatcgtagccgcagccgaagccgcagctggagccccaggaaagagagacga
cgtgagtctaagtttgatcagatggaggtaccggttgctgaagcgcgtcctgaacctggc
acatctcaattcccccaagtcccacaaaacatggcttccttggggacagagaatgttgat
cagtcccaggtcattgatagcattaattccgatccacccatgtctacatttgacaattcc
ggtccagctggtgaaccttaa
DBGET
integrated database retrieval system
