Daucus carota (carrot): 108199997
Help
Entry
108199997 CDS
T05350
Name
(RefSeq) RNA polymerase II transcription factor B subunit 2 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03022
Basal transcription factors
dcr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108199997
09124 Replication and repair
03420 Nucleotide excision repair
108199997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108199997
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108199997
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108199997
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108199997
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
108199997
NCBI-ProteinID:
XP_017223533
LinkDB
All DBs
Position
8:complement(15299843..15309891)
Genome browser
AA seq
449 aa
AA seq
DB search
MPEVRIIAKNFMDMVASLPATKLDNLYHNAFICEAILRSLPPLAKKYVLQMLYIIEPIVT
TSMEAWVAAEGMSKHRVAIDKLVQLRLFTETVDSRKRETTYRLNPTFQKNLQNHILHGGV
LPREPMKINVRLPSSADLDAYASGQWESFLLHLISSTEAEATRNISSSMMKIFQRGLLSQ
RDREAPMLTESGFQFLLMDTNAQLWYVIREYITHCEERGVDTSDLISFLLELSFHVSGEA
YNMNTLSHSQGSIVKDLADLGLVKLQQGMKESWFIPTKLAINLSISLSDASSRKQGYVVV
ETNFRLYAYTTSKLHCEILRLFARIEYQLPNLIVGAITKENLYKAFQNGITSDQIICFLQ
QNAHPRVAEKVPSVPENVTDQIRLWESDLNRVEMTPSHLYDEFPSRDAFEAACDFAREYG
GLLWEDSVKMRVIVKAETYDHMKRFLRQK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgccagaagtaaggattattgccaagaatttcatggacatggtggcttctttgcctgct
acaaagcttgataatttgtatcacaatgctttcatttgtgaagccattctcagatctttg
ccacctctagccaaaaagtatgtgctgcagatgttgtacattattgagcctatagtcact
acatcaatggaagcgtgggtggctgctgaaggaatgtcaaagcatagagtcgccattgac
aaattagttcagttgagactatttactgaaactgttgacagcaggaaaagggaaaccacg
tacagactgaatccaacatttcagaaaaaccttcagaatcatatattacatggaggggtt
ttaccaagggaacctatgaaaataaatgtgaggcttccaagctcagctgatttagatgcc
tatgcctctggacagtgggagagctttctgttgcaccttataagctccacagaagctgaa
gcaacaagaaacatcagctcctctatgatgaaaattttccagagaggccttctaagtcaa
agagacagggaagctcctatgttaacagagagtggttttcagttcttgcttatggataca
aatgcacaactttggtatgtcatcagggagtatattactcattgtgaggagcgaggtgtt
gatacgtcagatcttatctcatttctactggagctcagtttccatgtttctggtgaggct
tataatatgaacactttgagtcacagtcagggatccatagttaaggaccttgcagaccta
gggttggtcaagcttcagcagggtatgaaagagagttggttcattcctacgaaattggct
atcaatctttcaattagtctatccgatgcatcgtccagaaaacagggctatgttgttgtg
gagacaaactttaggctttatgcatatacaacatctaagttgcactgtgagattttacgc
ctatttgcaaggatagaatatcagctgccaaatctcattgttggagcaattacaaaagaa
aatctctataaggcttttcaaaatggcatcacctcagatcagattatttgctttctccag
cagaatgcacatcctcgagtcgctgaaaaagtgccttctgtaccagagaatgtaaccgat
cagataaggttgtgggaatcagatttgaatagggttgaaatgacaccttctcatttgtat
gacgagtttccttccagggatgcctttgaggctgcctgtgattttgcacgggagtatggt
gggttgctatgggaagattcagtaaagatgcgtgtaattgtgaaggctgaaacttacgat
cacatgaaaagatttcttcgtcaaaagtaa
DBGET
integrated database retrieval system
