Daucus carota (carrot): 108208538
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Entry
108208538 CDS
T05350
Name
(RefSeq) exopolygalacturonase
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr00040
Pentose and glucuronate interconversions
dcr01100
Metabolic pathways
Module
dcr_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108208538
Enzymes [BR:
dcr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
108208538
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
NosD
Motif
Other DBs
NCBI-GeneID:
108208538
NCBI-ProteinID:
XP_017234559
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Position
2:complement(40785358..40787482)
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AA seq
434 aa
AA seq
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MKTFEMKVILSIFLLVSYVANGIEDGTCNLYDRRGLVETPAAGDAAGGAAAPAGGAAGPA
GAAGGDGVFDISKCPNAKGDGSTDVTQSVQKSWDDACHSTANAKILIPQGEWLTGELNFA
GPCTAPQPISIEIIGTLKAKPDCGAFPSGMWINIFQTGVKIFGGGTLDGQGCEAWKTKSP
GGKALPDSLCITQCNASSAENINIVNSKGFNVKLVESHDFIADHLNISCAFDSPNTDGIH
LGEITNATIQNTVIGTGDDCISIGDNSVDILVNNVTCGPGHGISIGSLGRYPDEKDVKNI
MVQNCKLMNTTNGARIKTMHESPALTASNITFQDLTIENAFNPIIIDQHYFADKPGPSKV
KITGVTFKNIKGTSLSQEVVTLNCSDAVPCEGITVTDVDFKYTGNCTNTTLVSVCANAKA
TFGGVMNPPGCPPA
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacattcgagatgaaggttatattaagtatttttttgctcgtctcttatgtggcg
aatggtattgaagacggtacctgtaatttgtatgatcgtcgtggtcttgtagaaacgcct
gcagctggtgacgcggctggtggtgcggctgctccagctggtggtgctgctggtccagct
ggtgctgctgggggcgatggcgtttttgatatatcaaagtgtcctaatgcaaagggagac
ggatcgactgacgtcactcagagtgtacaaaagtcgtgggatgacgcgtgccattcgact
gcaaacgcgaagattctgataccacaaggagaatggttgacaggggagctcaattttgct
ggaccttgcacggctccccagcctataagcattgaaattataggcaccttaaaggcaaag
cctgattgtggagccttccccagtggcatgtggatcaatatctttcaaaccggtgtcaag
atcttcggtggaggcacgcttgacggacaaggctgcgaggcctggaagactaaatcccct
ggcggcaaggctcttccagattctctctgtatcactcaatgtaacgcctccagtgccgag
aacatcaacatagttaacagcaaaggcttcaatgtgaagctagttgagtctcatgacttc
atagctgaccatcttaacataagctgcgcctttgatagcccaaacacggacggcattcat
ttaggtgaaatcaccaacgcaaccatccaaaacacggtcattggaacaggcgatgattgc
atttcaattggagataacagtgttgatatcctcgtcaataatgtcacctgtggccctgga
cacggcatcagtatcggcagtcttggcagatatccagatgagaaagatgttaaaaacatc
atggtgcagaattgtaaattaatgaacaccacaaacggggcacgaatcaagacgatgcac
gagtctccagcactgaccgcaagtaacattacattccaagacctcaccatagagaatgca
ttcaatcccatcataatcgatcagcattactttgcagacaaaccagggccttcgaaagtg
aagatcacaggagtcactttcaaaaacatcaagggaacctccctgtcacaagaggtagtg
actctgaattgcagtgacgctgttccgtgtgaaggaatcaccgtgacagacgtcgatttc
aagtacactggaaactgcacaaacacgactctcgtgtcagtatgtgcaaatgcaaaagcc
acatttggcggtgtcatgaaccctccaggctgtcctccggcttaa
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